Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2118

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2117: 10485 - Hypothetical Protein, at 112509 to 114471 10485 mRNA_2118: 10486 - KOG0254 Predicted transporter (major facilitator superfamily), at 114569 to 117029 10486 mRNA_2119: 10487 - HMMPfam-Taurine catabolism dioxygenase TauD, TfdA family-PF02668,SUPERFAMILY--SSF51197, at 117592 to 119082 10487

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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114,004 + 10485 mRNA_2117 0.76 0.4
114,196 - 10485 mRNA_2117 0.86 1.2
114,203 + 10485 mRNA_2117 0.86 0.3
114,206 - 10485 mRNA_2117 0.86 0.2
114,433 + 1.3
114,465 - -0.4
114,471 + 0.6
114,575 - -0.4
114,581 - -0.1
114,626 - -1.0
114,677 + 0.0
114,711 - 0.4
114,857 - 10486 mRNA_2118 0.12 -0.9
114,893 + 10486 mRNA_2118 0.13 -0.3
115,108 + 10486 mRNA_2118 0.22 0.3
115,414 + 10486 mRNA_2118 0.34 -0.7
115,415 + 10486 mRNA_2118 0.34 -0.3
115,489 - 10486 mRNA_2118 0.37 -0.2
115,498 - 10486 mRNA_2118 0.38 0.1
115,546 + 10486 mRNA_2118 0.40 -0.1
115,565 - 10486 mRNA_2118 0.40 1.0
115,609 + 10486 mRNA_2118 0.42 -0.6
116,196 + 10486 mRNA_2118 0.66 -0.1
116,299 - 10486 mRNA_2118 0.70 -2.6
116,384 - 10486 mRNA_2118 0.74 -0.3
116,516 + 10486 mRNA_2118 0.79 -0.2
116,567 - 10486 mRNA_2118 0.81 1.1
116,790 + -1.2
116,790 + 0.5
117,160 - -0.3
117,179 + 0.2
117,179 + 1.6
117,193 + 0.1
117,193 + -2.8
117,196 + -0.2
117,239 - -1.0
117,314 - 0.7
117,319 + -0.6
117,319 + 0.6
117,338 + 1.0
117,339 - -0.3
117,341 + -0.8
117,397 + -0.3
117,458 - -1.5
117,538 - -0.1
117,541 - 0.7
117,542 - -0.1
117,565 + -1.1
117,587 - -0.7
117,588 - -0.2
117,824 - 10487 mRNA_2119 0.16 -0.4
117,833 + 10487 mRNA_2119 0.16 0.5
117,863 + 10487 mRNA_2119 0.18 0.6
117,866 - 10487 mRNA_2119 0.18 -1.3
117,929 + 10487 mRNA_2119 0.23 0.2