Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2117

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2116: 10484 - K01184 E3.2.1.15 polygalacturonase, at 110471 to 111882 10484 mRNA_2117: 10485 - Hypothetical Protein, at 112509 to 114471 10485 mRNA_2118: 10486 - KOG0254 Predicted transporter (major facilitator superfamily), at 114569 to 117029 10486

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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111,526 + 10484 mRNA_2116 0.75 0.0
111,572 - 10484 mRNA_2116 0.78 0.4
111,636 - 10484 mRNA_2116 0.83 0.7
111,640 - 10484 mRNA_2116 0.83 -0.9
111,649 - 10484 mRNA_2116 0.83 0.6
111,668 - 10484 mRNA_2116 0.85 -0.4
111,691 + 10484 mRNA_2116 0.86 -1.7
111,726 - 10484 mRNA_2116 0.89 -1.4
111,809 - 0.4
112,069 - 0.2
112,087 + -1.2
112,128 - -0.3
112,305 + 0.8
112,306 - 1.4
112,380 - 0.4
112,382 + -0.3
112,384 - 1.0
112,410 - 0.3
112,414 + -0.4
112,435 - -1.1
112,529 - -0.2
112,543 - 1.4
112,649 - -0.6
112,676 - 0.1
112,696 - 0.3
112,954 - 10485 mRNA_2117 0.23 -0.5
113,039 + 10485 mRNA_2117 0.27 -0.2
113,114 + 10485 mRNA_2117 0.31 0.4
113,139 + 10485 mRNA_2117 0.32 -3.4
113,234 + 10485 mRNA_2117 0.37 0.9
114,004 + 10485 mRNA_2117 0.76 0.4
114,196 - 10485 mRNA_2117 0.86 1.2
114,203 + 10485 mRNA_2117 0.86 0.3
114,206 - 10485 mRNA_2117 0.86 0.2
114,433 + 1.3
114,465 - -0.4
114,471 + 0.6
114,575 - -0.4
114,581 - -0.1
114,626 - -1.0
114,677 + 0.0
114,711 - 0.4
114,857 - 10486 mRNA_2118 0.12 -0.9
114,893 + 10486 mRNA_2118 0.13 -0.3
115,108 + 10486 mRNA_2118 0.22 0.3
115,414 + 10486 mRNA_2118 0.34 -0.7
115,415 + 10486 mRNA_2118 0.34 -0.3