Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2084

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2083: 10451 - K06276 PDPK1 3-phosphoinositide dependent protein kinase-1, at 30266 to 34170 10451 mRNA_2084: 10452 - KOG0254 Predicted transporter (major facilitator superfamily), at 34690 to 37198 10452

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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33,816 + -0.6
33,833 + 1.4
33,961 + 1.5
33,964 - 0.5
33,973 + 0.9
34,091 - -1.3
34,118 + 0.0
34,215 - 0.1
34,266 - -0.2
34,369 + 0.1
34,692 - -0.8
34,980 + 10452 mRNA_2084 0.12 -1.0
35,015 + 10452 mRNA_2084 0.13 0.1
35,019 - 10452 mRNA_2084 0.13 0.3
35,150 + 10452 mRNA_2084 0.18 -1.0
35,258 - 10452 mRNA_2084 0.23 -0.1
35,390 - 10452 mRNA_2084 0.28 0.7
35,754 + 10452 mRNA_2084 0.42 -0.2
35,973 - 10452 mRNA_2084 0.51 0.2
35,991 + 10452 mRNA_2084 0.52 -0.5
35,991 + 10452 mRNA_2084 0.52 -1.0
36,011 - 10452 mRNA_2084 0.53 -1.0
36,042 + 10452 mRNA_2084 0.54 -1.1
36,149 + 10452 mRNA_2084 0.58 0.3
36,182 + 10452 mRNA_2084 0.59 0.8
36,326 + 10452 mRNA_2084 0.65 -0.7
36,373 + 10452 mRNA_2084 0.67 -0.5
36,410 + 10452 mRNA_2084 0.69 -0.9
36,456 - 10452 mRNA_2084 0.70 -0.2
36,559 + 10452 mRNA_2084 0.74 0.7
37,025 - -0.7
37,197 - -1.2
37,481 - -0.2
37,483 + 0.6
37,492 - 0.1
37,496 + -0.4
37,513 - -0.3
37,569 + -1.3
37,615 + -1.2
37,615 - -1.2
37,631 + 0.5
37,635 - -1.0
37,638 + -0.7
37,639 + -0.5
37,640 - 0.7
37,644 + -0.2
37,830 - 0.3
37,837 + 0.0
37,846 + 1.2
37,923 + 0.1
37,940 + 0.1
37,940 - -0.0
38,103 - -1.1