Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2078

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2077: 10445 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 19100 to 20228 10445 mRNA_2078: 10446 - K10773 NTH endonuclease III, at 20466 to 22211 10446 mRNA_2079: 10447 - Hypothetical Protein, at 22579 to 23856 10447

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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19,482 - 10445 mRNA_2077 0.34 0.3
19,649 - 10445 mRNA_2077 0.49 -0.8
19,663 + 10445 mRNA_2077 0.50 0.6
19,676 - 10445 mRNA_2077 0.51 -0.2
19,761 + 10445 mRNA_2077 0.59 0.3
19,762 + 10445 mRNA_2077 0.59 -0.2
19,949 - 10445 mRNA_2077 0.75 -1.0
20,094 - 10445 mRNA_2077 0.88 1.0
20,094 - 10445 mRNA_2077 0.88 -0.9
20,100 + 10445 mRNA_2077 0.89 -1.7
20,100 + 10445 mRNA_2077 0.89 0.0
20,306 + -0.5
20,419 + 0.6
20,794 - 10446 mRNA_2078 0.19 0.0
20,866 - 10446 mRNA_2078 0.23 -0.2
21,016 - 10446 mRNA_2078 0.32 0.5
21,051 + 10446 mRNA_2078 0.34 0.8
21,120 - 10446 mRNA_2078 0.37 -0.2
21,148 - 10446 mRNA_2078 0.39 -0.1
21,401 - 10446 mRNA_2078 0.54 -1.1
21,857 + 10446 mRNA_2078 0.80 0.1
21,860 + 10446 mRNA_2078 0.80 0.3
21,932 + 10446 mRNA_2078 0.84 -1.0
22,332 + -1.9
22,338 - -1.8
22,341 + -1.6
22,342 - 0.6
22,348 + -0.5
22,349 + 1.9
22,353 + 1.3
22,358 + 0.9
22,366 - -0.2
22,486 + 0.3
22,490 + -0.2
22,512 - -0.8
22,530 + 0.8
22,589 + 0.5
22,777 - 10447 mRNA_2079 0.15 -0.2
22,817 - 10447 mRNA_2079 0.19 0.5
22,835 - 10447 mRNA_2079 0.20 0.3