Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2063

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2062: 10430 - K06210 NMNAT nicotinamide mononucleotide adenylyltransferase, at 860040 to 861424 10430 mRNA_2063: 10431 - SUPERFAMILY--SSF140860, at 861824 to 863143 10431 mRNA_2064: 10432 - KOG3839 Lectin VIP36, involved in the transport of glycoproteins carrying high mannose-type glycans, at 863719 to 865833 10432

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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861,616 - -0.0
861,638 - 1.1
861,644 - -1.4
861,647 + 0.7
861,669 + -0.3
861,736 - 0.1
861,750 + -0.6
861,754 + -0.6
861,767 - -1.7
861,768 + 1.0
861,772 - -0.4
861,777 + -0.8
861,789 - 0.4
861,812 + -0.2
861,993 - 10431 mRNA_2063 0.13 -1.1
862,035 + 10431 mRNA_2063 0.16 -0.2
862,043 + 10431 mRNA_2063 0.17 -0.9
862,051 + 10431 mRNA_2063 0.17 -1.8
862,058 - 10431 mRNA_2063 0.18 -0.5
862,076 - 10431 mRNA_2063 0.19 -0.9
862,161 - 10431 mRNA_2063 0.26 -1.2
862,165 + 10431 mRNA_2063 0.26 0.0
862,483 - 10431 mRNA_2063 0.50 -0.2
862,490 - 10431 mRNA_2063 0.50 0.9
862,909 - 10431 mRNA_2063 0.82 -0.3
862,929 - 10431 mRNA_2063 0.84 1.0
862,978 - 10431 mRNA_2063 0.87 -0.2
863,009 - 10431 mRNA_2063 0.90 -0.7
863,068 - 1.6
863,072 - 0.6
863,236 - 0.3
863,240 - -0.5
863,250 - -0.2
863,279 - -0.1
863,331 - -0.9
863,353 + -0.8
863,779 - 0.3
863,786 - -0.7
863,792 - -0.7
863,939 - 10432 mRNA_2064 0.10 0.4
863,942 - 10432 mRNA_2064 0.11 0.4
864,027 - 10432 mRNA_2064 0.15 -1.3