Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2036

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2035: 10403 - K14824 ERB1, BOP1 ribosome biogenesis protein ERB1, at 801171 to 804014 10403 mRNA_2036: 10404 - HMMPfam-Alpha and gamma adaptin binding protein p34-PF10199, at 804134 to 805617 10404 mRNA_2037: 10405 - Hypothetical Protein, at 806389 to 807325 10405

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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804,209 + -2.3
804,368 - 10404 mRNA_2036 0.16 -2.3
804,563 + 10404 mRNA_2036 0.29 -0.7
804,695 + 10404 mRNA_2036 0.38 0.2
804,856 + 10404 mRNA_2036 0.49 -3.3
804,863 + 10404 mRNA_2036 0.49 1.4
805,257 - 10404 mRNA_2036 0.76 -0.6
805,279 + 10404 mRNA_2036 0.77 -2.1
805,799 + 1.3
806,109 - 0.5
806,122 - -1.3
806,129 + -1.5
806,251 - 0.2
806,259 - 0.1
806,358 - -0.1
806,366 + -1.8
806,403 + 0.5
806,482 + -1.5
806,531 + 10405 mRNA_2037 0.15 0.4
806,595 - 10405 mRNA_2037 0.22 -1.5
806,596 - 10405 mRNA_2037 0.22 0.1
806,600 + 10405 mRNA_2037 0.23 -1.9
806,613 + 10405 mRNA_2037 0.24 -2.1