Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2021

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2020: 10388 - KOG1703 Adaptor protein Enigma and related PDZ-LIM proteins, at 762718 to 765022 10388 mRNA_2021: 10389 - BLAST deacetylase-like protein [Drechmeria coniospora], at 765421 to 766356 10389 mRNA_2022: 10390 - BLAST KLLA0F09339p [Kluyveromyces lactis], at 766628 to 767371 10390

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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764,689 - 10388 mRNA_2020 0.86 0.1
764,737 + 10388 mRNA_2020 0.88 0.3
764,919 + 0.3
764,921 + 0.0
764,924 - -0.7
764,931 - 0.3
764,945 + -0.6
764,964 + 0.0
765,085 - 1.1
765,092 + 0.5
765,096 - -0.7
765,400 + -0.4
765,403 + -0.1
765,509 - -0.6
765,699 - 10389 mRNA_2021 0.30 0.3
766,253 - 10389 mRNA_2021 0.89 -0.4
766,278 - -0.0
766,308 + 1.0
766,399 - -1.7
766,399 + -0.4
766,400 - -1.0
766,402 - -0.6
766,545 - 0.2
766,710 - 10390 mRNA_2022 0.11 2.0
766,725 - 10390 mRNA_2022 0.13 -0.3
766,731 + 10390 mRNA_2022 0.14 -0.6
766,850 + 10390 mRNA_2022 0.30 -0.1
766,988 - 10390 mRNA_2022 0.48 0.2
767,181 - 10390 mRNA_2022 0.74 1.5
767,274 + 10390 mRNA_2022 0.87 -0.8