Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2013

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2012: 10380 - K00681 ggt gamma-glutamyltranspeptidase / glutathione hydrolase, at 740635 to 742993 10380 mRNA_2013: 10381 - SUPERFAMILY--SSF49899, at 743258 to 744708 10381 mRNA_2014: 10382 - K20697 GNBP1 gram-negative bacteria-binding protein 1, at 745416 to 747550 10382

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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742,310 + 10380 mRNA_2012 0.71 -0.0
742,610 + 10380 mRNA_2012 0.84 0.1
742,852 - 0.8
742,960 + 0.1
743,120 + -0.8
743,382 - 0.2
743,503 - 10381 mRNA_2013 0.17 -0.1
744,058 - 10381 mRNA_2013 0.55 -0.7
744,076 - 10381 mRNA_2013 0.56 -0.3
744,098 + 10381 mRNA_2013 0.58 -0.3
744,100 + 10381 mRNA_2013 0.58 -0.5
744,258 - 10381 mRNA_2013 0.69 -2.3
744,270 - 10381 mRNA_2013 0.70 -1.6
744,415 + 10381 mRNA_2013 0.80 -0.5
744,550 + 10381 mRNA_2013 0.89 -0.5
744,643 - 1.3
744,702 - -0.2
744,798 + -1.3
744,846 + 0.1
744,853 + 0.6
744,858 + 1.7
744,858 + -0.4
744,868 - -1.4
744,871 + 1.6
744,877 - 0.1
744,879 + -0.4
744,879 - -0.1
744,880 - 0.8
744,880 - 0.1
744,882 - 0.7
744,882 - -0.6
744,882 - -1.3
744,883 - 0.3
744,884 + 0.0
744,885 + -0.2
744,885 + 0.7
744,885 - -0.1
744,886 + 0.4
744,895 + 0.3
744,895 + -1.0
744,898 + 0.3
744,898 + -0.1
744,900 - 1.1
744,906 + -1.2
744,917 + -0.5
744,927 + -0.0
744,938 + 0.2
744,964 + -1.0
744,984 - -0.7
744,990 - 0.2
745,003 + -0.2
745,011 - 0.6
745,013 - -0.2
745,014 - 0.9
745,017 - -0.0
745,020 + -0.8
745,021 - 0.9
745,022 - 0.1
745,053 - -0.4
745,068 - -1.3
745,072 - -0.3
745,099 - -0.6
745,119 - -1.3
745,120 - -1.0
745,126 + 0.2
745,127 - 0.5
745,134 + 0.5
745,137 + -1.0
745,187 - 0.9
745,265 - -2.0
745,268 + 0.0
745,274 + -0.1
745,276 + 0.8
745,305 + 0.5
745,309 - 0.3
745,502 + 0.4