Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1940

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1939: 10307 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 558580 to 560603 10307 mRNA_1940: 10308 - K00276 AOC3, AOC2, tynA primary-amine oxidase, at 561164 to 563777 10308 mRNA_1941: 10309 - KOG3798 Predicted Zn-dependent hydrolase (beta-lactamase superfamily), at 564207 to 567007 10309

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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560,181 + 10307 mRNA_1939 0.79 0.3
560,236 - 10307 mRNA_1939 0.82 -0.6
560,531 - -0.2
560,666 - -0.7
560,684 + -1.6
560,688 - -1.3
560,696 + 1.0
560,716 + -0.9
560,720 + 0.5
560,726 + -1.8
560,727 - -0.0
560,747 - 0.0
560,756 - -0.1
560,781 + 0.4
560,798 - -0.3
560,817 + 0.1
560,826 + -0.3
560,827 - -0.7
560,836 - -0.4
560,840 + -0.0
560,850 + -0.4
560,852 - -0.3
560,864 + -0.6
560,864 - 0.5
560,986 - 2.4
560,990 - 0.2
560,991 + -0.3
560,996 - -0.4
560,997 - -0.6
561,002 + 1.0
561,002 - 0.6
561,009 + 1.3
561,011 + -1.1
561,011 + 1.4
561,014 - -0.3
561,024 - -0.6
561,026 + -1.6
561,030 + -1.6
561,031 + 0.7
561,034 + 0.8
561,059 + -0.0
561,059 - -1.0
561,065 + 2.0
561,067 - 0.0
561,068 + 0.8
561,075 - -0.3
561,076 + -0.3
561,077 + 0.5
561,081 - -0.3
561,083 + -0.1
561,089 - -0.2
561,091 + 0.8
561,093 + -0.2
561,093 + -0.9
561,095 - 0.1
561,098 + -1.6
561,104 + -0.7
561,104 + -0.7
561,106 + -3.0
561,208 + 0.2
561,227 - 1.1
561,232 + -1.8
561,243 - -0.9
561,244 + 0.4
561,339 + -1.9
561,519 - 10308 mRNA_1940 0.14 -0.7
561,592 - 10308 mRNA_1940 0.16 0.2
561,681 - 10308 mRNA_1940 0.20 1.0
561,684 + 10308 mRNA_1940 0.20 -0.5
562,384 + 10308 mRNA_1940 0.47 1.8
562,417 - 10308 mRNA_1940 0.48 -0.2
562,543 - 10308 mRNA_1940 0.53 -0.6
562,568 + 10308 mRNA_1940 0.54 -0.3
562,657 + 10308 mRNA_1940 0.57 0.2
562,687 - 10308 mRNA_1940 0.58 1.6
562,856 + 10308 mRNA_1940 0.65 0.9
563,001 - 10308 mRNA_1940 0.70 -0.5
563,014 - 10308 mRNA_1940 0.71 -0.1
563,280 - 10308 mRNA_1940 0.81 -0.2
563,293 + 10308 mRNA_1940 0.81 -0.1
563,561 - 1.1
563,640 + 0.6
563,755 + -0.5
563,848 - -0.7
563,870 + 0.1
563,886 + -0.3
563,888 - 1.0
563,897 + 0.1
563,905 + -2.4
563,905 - -0.4
563,909 - 2.1
563,909 + -1.0
563,915 - -0.6
564,040 - -0.4
564,043 + -0.2
564,048 - -1.8
564,070 + -0.0
564,205 + 0.2
564,206 - -0.5
564,372 + -0.5
564,375 + 0.1