Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1818

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1817: 10185 - HMMPfam-Ring finger domain-PF13639,ProSitePatterns-EGF-like domain signature 1.-PS00022,ProSiteProfiles-Zinc finger RING-type profile.-PS50089,ProSiteProfiles-Zinc finger SWIM-type profile.-PS50966,SUPERFAMILY--SSF57850, at 285247 to 286558 10185 mRNA_1818: 10186 - Hypothetical Protein, at 286917 to 287591 10186 mRNA_1819: 10187 - K09215 OSR, ODD odd-skipped, at 287876 to 290451 10187

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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286,669 - -0.1
286,677 + 0.5
286,696 + 1.7
286,697 + -0.2
286,701 + -0.1
286,728 + -0.7
286,807 - -0.4
286,825 - -0.2
286,825 - -0.3
286,839 - -1.8
286,841 - -0.5
286,841 - 1.0
286,849 - -0.4
286,849 - -0.1
286,852 - -0.9
286,855 - -0.4
286,862 - -0.6
286,871 + 1.3
286,887 + -0.0
287,167 + 10186 mRNA_1818 0.37 0.2
287,172 - 10186 mRNA_1818 0.38 0.6
287,175 + 10186 mRNA_1818 0.38 -0.9
287,196 - 10186 mRNA_1818 0.41 -0.3
287,199 + 10186 mRNA_1818 0.42 -0.7
287,311 - 10186 mRNA_1818 0.58 0.6
287,331 - 10186 mRNA_1818 0.61 -0.2
287,335 - 10186 mRNA_1818 0.62 -0.0
287,359 - 10186 mRNA_1818 0.65 0.7
287,382 + 10186 mRNA_1818 0.69 0.1
287,395 + 10186 mRNA_1818 0.71 0.2
287,400 - 10186 mRNA_1818 0.72 -0.4
287,403 + 10186 mRNA_1818 0.72 -0.0
287,406 + 10186 mRNA_1818 0.72 -1.7
287,489 + 10186 mRNA_1818 0.85 0.1
287,533 + 0.8
287,645 + -0.1
287,654 - -0.5
287,656 + 0.8
287,660 - -0.7
287,712 - -0.4
287,721 + 0.8
287,778 - 0.0
287,778 + -0.1
287,778 + -0.2
287,795 + -0.2
287,803 + -0.1
287,853 - 0.8
287,967 + -0.9
287,995 - -0.2
288,007 - -2.0
288,010 + 0.1
288,014 + 0.5
288,017 - 0.6
288,018 + -1.1
288,019 + 0.6
288,037 + -0.7
288,151 + 10187 mRNA_1819 0.11 1.2
288,164 + 10187 mRNA_1819 0.11 0.2
288,171 + 10187 mRNA_1819 0.11 -0.5
288,472 + 10187 mRNA_1819 0.23 -1.4
288,479 + 10187 mRNA_1819 0.23 0.3
288,497 + 10187 mRNA_1819 0.24 0.3