Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1790

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1789: 10157 - K10573 UBE2A, UBC2, RAD6A ubiquitin-conjugating enzyme E2 A, at 210969 to 211922 10157 mRNA_1790: 10158 - Hypothetical Protein, at 212184 to 213881 10158 mRNA_1791: 10159 - Hypothetical Protein, at 214130 to 214450 10159 mRNA_1792: 10160 - Hypothetical Protein, at 214724 to 215217 10160

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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211,962 + -0.1
211,964 + -1.0
211,967 - 0.4
211,968 + -0.5
211,979 - -1.2
212,059 + -1.1
212,097 + -0.6
212,441 + 10158 mRNA_1790 0.15 -0.4
212,707 - 10158 mRNA_1790 0.31 -1.0
212,988 - 10158 mRNA_1790 0.47 -0.4
212,988 + 10158 mRNA_1790 0.47 0.7
213,004 - 10158 mRNA_1790 0.48 -1.6
213,007 - 10158 mRNA_1790 0.48 0.6
213,123 - 10158 mRNA_1790 0.55 -0.1
213,168 - 10158 mRNA_1790 0.58 -0.3
213,239 - 10158 mRNA_1790 0.62 -1.6
213,442 + 10158 mRNA_1790 0.74 -0.4
213,564 + 10158 mRNA_1790 0.81 0.8
213,706 - 10158 mRNA_1790 0.90 0.1
214,016 - -1.4
214,019 + 0.0
214,162 - 10159 mRNA_1791 0.10 -0.2
214,184 + 10159 mRNA_1791 0.17 0.1
214,190 - 10159 mRNA_1791 0.19 1.1
214,319 - 10159 mRNA_1791 0.59 1.8
214,323 - 10159 mRNA_1791 0.60 0.1
214,328 - 10159 mRNA_1791 0.62 0.1
214,335 - 10159 mRNA_1791 0.64 0.0
214,336 - 10159 mRNA_1791 0.64 2.2
214,336 - 10159 mRNA_1791 0.64 -0.5
214,337 + 10159 mRNA_1791 0.64 -0.5
214,347 + 10159 mRNA_1791 0.68 -0.8
214,349 - 10159 mRNA_1791 0.68 -0.4
214,357 + 10159 mRNA_1791 0.71 1.4
214,367 + 10159 mRNA_1791 0.74 -0.3
214,384 - 10159 mRNA_1791 0.79 -1.2
214,461 - 0.2
214,467 + 0.4
214,473 - -0.2
214,484 - -0.7
214,485 + 1.2
214,486 + -0.2
214,520 - 0.4
214,549 - -0.8
214,628 - 0.1
214,772 - -0.4
214,786 - 10160 mRNA_1792 0.13 -0.5