Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1706

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1706: 10074 - K08286 E2.7.11.- protein-serine/threonine kinase, at 343 to 1191 10074 mRNA_1707: 10075 - BLAST related to SNF1-related protein kinase KIN10 [Melanop..., at 1188 to 2835 10075

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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26 + -0.5
27 + 0.7
28 + -0.3
31 + -0.9
31 + 0.4
41 + -0.2
66 + -1.4
72 - 0.8
72 - -0.1
93 + 0.5
104 + 1.4
105 + -0.2
108 + -2.4
120 - 0.3
128 + -0.1
135 - -1.3
136 + -0.4
136 - -0.8
137 - 2.0
137 - -0.2
138 + 0.0
139 + 0.6
141 - -0.6
150 - 0.8
151 - 1.0
155 + -0.2
155 + 1.9
156 + 0.2
158 + -0.7
173 - -1.3
175 + 2.7
180 - -0.0
215 + -0.2
220 - -2.8
234 + 0.2
254 - -0.1
283 + 1.2
304 + -0.1
322 + 0.1
324 + -0.3
427 + -0.8
453 + 10074 mRNA_1706 0.13 -0.1
465 - 10074 mRNA_1706 0.14 3.1
482 + 10074 mRNA_1706 0.16 -0.0
493 - 10074 mRNA_1706 0.18 0.0
647 + 10074 mRNA_1706 0.36 -0.4
683 - 10074 mRNA_1706 0.40 0.5
809 + 10074 mRNA_1706 0.55 -0.1
842 - 10074 mRNA_1706 0.59 0.2
844 + 10074 mRNA_1706 0.59 0.2
848 - 10074 mRNA_1706 0.59 1.0
902 + 10074 mRNA_1706 0.66 0.2
949 - 10074 mRNA_1706 0.71 1.7
949 - 10074 mRNA_1706 0.71 -1.2
950 + 10074 mRNA_1706 0.71 -0.3
974 - 10074 mRNA_1706 0.74 -0.4
1,016 + 10074 mRNA_1706 0.79 0.5
1,065 + 10074 mRNA_1706 0.85 -0.2
1,118 + -0.3
1,142 + -0.3
1,155 + -0.3
1,272 - -0.1
1,281 + -0.8
1,573 + 10075 mRNA_1707 0.23 1.4
1,625 + 10075 mRNA_1707 0.27 -0.0
1,625 + 10075 mRNA_1707 0.27 -0.9
1,628 + 10075 mRNA_1707 0.27 0.5
1,646 + 10075 mRNA_1707 0.28 0.1
1,649 - 10075 mRNA_1707 0.28 0.6
1,680 + 10075 mRNA_1707 0.30 -0.6
1,781 + 10075 mRNA_1707 0.36 0.1
1,926 + 10075 mRNA_1707 0.45 -0.0
1,996 + 10075 mRNA_1707 0.49 0.6
2,005 - 10075 mRNA_1707 0.50 -1.6
2,010 - 10075 mRNA_1707 0.50 -0.8
2,033 + 10075 mRNA_1707 0.51 -0.3
2,068 + 10075 mRNA_1707 0.53 -0.2
2,076 + 10075 mRNA_1707 0.54 0.2