Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1634

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1633: 10001 - HMMPfam-Major Facilitator Superfamily-PF07690,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473, at 762446 to 764135 10001 mRNA_1634: 10002 - HMMPfam-alpha/beta hydrolase fold-PF07859,ProSitePatterns-Lipolytic enzymes "G-D-X-G" family, putative serine active site.-PS01174,SUPERFAMILY--SSF53474, at 764315 to 766210 10002

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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763,319 - 10001 mRNA_1633 0.52 0.2
763,686 - 10001 mRNA_1633 0.73 0.1
763,697 - 10001 mRNA_1633 0.74 -0.2
764,029 + 0.6
764,245 - 1.6
764,261 + 1.0
764,263 - 0.1
764,263 - 0.2
764,269 - 0.2
764,430 - 0.1
764,821 - 10002 mRNA_1634 0.27 -0.9
765,148 - 10002 mRNA_1634 0.44 -1.6
765,427 - 10002 mRNA_1634 0.59 -0.7
765,517 - 10002 mRNA_1634 0.63 -3.2
765,529 - 10002 mRNA_1634 0.64 -2.2
765,547 - 10002 mRNA_1634 0.65 -0.5
765,652 + 10002 mRNA_1634 0.71 0.1
765,710 + 10002 mRNA_1634 0.74 0.6
765,863 + 10002 mRNA_1634 0.82 1.0
766,005 - 10002 mRNA_1634 0.89 -1.2
766,210 + 0.1
766,315 + 0.6
766,328 - 1.6
766,600 + -0.0
766,603 + 0.4
766,908 - -0.7
766,909 + 0.4
766,909 + -0.5
767,051 + -1.6
767,053 - -0.1
767,178 - 0.4
767,189 - -0.2