Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1592

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1591: 9959 - K01835 pgm phosphoglucomutase, at 673406 to 675711 9959 mRNA_1592: 9960 - HMMPfam-bZIP transcription factor-PF00170,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959, at 676262 to 677615 9960

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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675,268 + 9959 mRNA_1591 0.81 0.8
675,678 + 1.0
675,821 - 0.6
675,829 - 0.5
675,847 - 0.3
675,901 + 0.2
675,995 + 0.7
676,002 + 1.4
676,003 - -0.2
676,016 + 2.1
676,115 - 2.2
676,116 - -0.8
676,120 - 0.1
676,135 - 0.7
676,909 - 9960 mRNA_1592 0.48 -0.1
676,913 + 9960 mRNA_1592 0.48 -0.0
676,926 + 9960 mRNA_1592 0.49 0.7
677,074 + 9960 mRNA_1592 0.60 -0.6
677,086 + 9960 mRNA_1592 0.61 0.2
677,323 + 9960 mRNA_1592 0.78 1.6
677,801 + 0.5
678,370 - 0.6
678,513 + 0.4
678,535 - 0.3
678,541 + 0.4
678,550 - 0.6
678,560 + 1.1
678,571 - 1.2
678,583 + 0.4
678,588 + -0.2