Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1581

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1580: 9948 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 650033 to 651263 9948 mRNA_1581: 9949 - HMMPfam-Protein of unknown function (DUF3759)-PF12585, at 651787 to 652843 9949 mRNA_1582: 9950 - K01381 PEP4 saccharopepsin, at 653441 to 655468 9950

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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650,865 + 9948 mRNA_1580 0.68 0.3
651,318 - 0.5
651,450 - 0.6
651,564 - -0.1
651,597 + -0.8
651,609 - 1.1
651,609 + 0.2
651,629 - 0.1
651,638 - 0.7
651,640 + 0.2
651,645 - 1.0
651,648 - 0.4
651,653 + -0.0
651,659 + 0.6
651,671 - 1.0
651,677 + 0.3
651,678 - 0.5
651,680 + 0.8
651,844 - -0.3
651,851 + 1.0
651,960 + 9949 mRNA_1581 0.16 1.0
651,969 + 9949 mRNA_1581 0.17 -0.1
652,144 - 9949 mRNA_1581 0.34 1.0
653,037 - 0.5
653,309 - 1.0
653,356 + 0.3