Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1558

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1557: 9925 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF81383, at 588478 to 590403 9925 mRNA_1558: 9926 - KOG4155 FOG WD40 repeat, at 590667 to 593724 9926 mRNA_1559: 9927 - Hypothetical Protein, at 594333 to 596246 9927

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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589,731 - 9925 mRNA_1557 0.65 0.2
589,929 - 9925 mRNA_1557 0.75 -0.7
589,988 + 9925 mRNA_1557 0.78 0.7
590,567 - 0.3
590,568 + 0.9
590,589 + -1.4
590,599 - -0.3
591,854 + 9926 mRNA_1558 0.39 0.1
592,324 - 9926 mRNA_1558 0.54 0.7
592,350 + 9926 mRNA_1558 0.55 2.3
592,861 + 9926 mRNA_1558 0.72 1.1