Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1553

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1552: 9920 - K03115 CSNK2B casein kinase II subunit beta, at 573433 to 575580 9920 mRNA_1553: 9921 - KOG1729 FYVE finger containing protein, at 575685 to 583746 9921 mRNA_1554: 9922 - KOG1611 Predicted short chain-type dehydrogenase, at 583831 to 584732 9922

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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575,474 - 0.3
575,486 - 1.0
575,497 + 1.8
575,615 + 1.2
575,628 + 0.6
575,630 - 0.6
575,630 + 0.8
575,651 - 0.9
575,768 - 0.2
575,778 + -0.1
575,781 + 0.0
575,785 - 0.2
575,787 + 1.0
575,958 + 0.5
576,079 - 0.7
576,243 + -0.4
576,501 - 9921 mRNA_1553 0.10 1.1
576,662 - 9921 mRNA_1553 0.12 0.4
576,699 + 9921 mRNA_1553 0.13 1.2
577,408 + 9921 mRNA_1553 0.21 0.5
577,439 + 9921 mRNA_1553 0.22 0.6
577,545 - 9921 mRNA_1553 0.23 -0.0
577,822 - 9921 mRNA_1553 0.27 1.9
577,921 + 9921 mRNA_1553 0.28 1.3
577,961 - 9921 mRNA_1553 0.28 1.3
577,963 - 9921 mRNA_1553 0.28 -2.0
577,981 - 9921 mRNA_1553 0.28 1.1
577,988 + 9921 mRNA_1553 0.29 0.7
577,990 - 9921 mRNA_1553 0.29 0.2
577,991 - 9921 mRNA_1553 0.29 -0.0
577,993 + 9921 mRNA_1553 0.29 0.0
577,998 + 9921 mRNA_1553 0.29 0.9
578,001 + 9921 mRNA_1553 0.29 -0.1
578,020 + 9921 mRNA_1553 0.29 0.1
578,112 + 9921 mRNA_1553 0.30 0.4
578,151 - 9921 mRNA_1553 0.31 0.6
578,169 - 9921 mRNA_1553 0.31 1.4
578,433 + 9921 mRNA_1553 0.34 -0.8
578,438 + 9921 mRNA_1553 0.34 -0.2
578,447 - 9921 mRNA_1553 0.34 -0.3
578,878 + 9921 mRNA_1553 0.40 0.2
579,131 - 9921 mRNA_1553 0.43 0.0
579,308 - 9921 mRNA_1553 0.45 0.8
579,607 - 9921 mRNA_1553 0.49 0.2
579,762 - 9921 mRNA_1553 0.51 0.6
579,867 - 9921 mRNA_1553 0.52 1.4
581,045 + 9921 mRNA_1553 0.66 0.2
581,071 + 9921 mRNA_1553 0.67 2.0
581,185 - 9921 mRNA_1553 0.68 0.9
581,372 + 9921 mRNA_1553 0.71 -1.8
581,484 + 9921 mRNA_1553 0.72 -0.5
581,502 - 9921 mRNA_1553 0.72 1.0
581,504 - 9921 mRNA_1553 0.72 0.7
581,506 + 9921 mRNA_1553 0.72 -0.7
581,521 + 9921 mRNA_1553 0.72 0.1
581,529 - 9921 mRNA_1553 0.72 1.3
581,530 + 9921 mRNA_1553 0.73 0.2
581,532 + 9921 mRNA_1553 0.73 1.2
581,549 - 9921 mRNA_1553 0.73 0.1
581,563 + 9921 mRNA_1553 0.73 -0.5
581,682 + 9921 mRNA_1553 0.74 0.1
581,703 - 9921 mRNA_1553 0.75 1.5
581,706 + 9921 mRNA_1553 0.75 -0.0
581,715 + 9921 mRNA_1553 0.75 -1.1
581,719 + 9921 mRNA_1553 0.75 1.5
581,809 - 9921 mRNA_1553 0.76 -0.9
581,847 - 9921 mRNA_1553 0.76 0.6
581,851 - 9921 mRNA_1553 0.76 0.2
581,999 - 9921 mRNA_1553 0.78 -1.0
582,045 + 9921 mRNA_1553 0.79 0.8
582,165 + 9921 mRNA_1553 0.80 0.5
582,431 - 9921 mRNA_1553 0.84 0.7
582,599 + 9921 mRNA_1553 0.86 0.3
583,151 + 0.8
583,765 - 1.2
583,853 + 2.3
584,014 + 9922 mRNA_1554 0.20 -0.1
584,185 - 9922 mRNA_1554 0.39 -0.0
584,209 + 9922 mRNA_1554 0.42 -0.4