Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1535

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1534: 9902 - K12493 ARFGAP2_3 ADP-ribosylation factor GTPase-activating protein 2/3, at 530272 to 532362 9902 mRNA_1535: 9903 - K12471 EPN epsin, at 532822 to 534645 9903 mRNA_1536: 9904 - K19783 HCS1 DNA polymerase alpha-associated DNA helicase A, at 534766 to 537382 9904

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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531,979 - 9902 mRNA_1534 0.82 0.7
531,996 + 9902 mRNA_1534 0.82 0.1
532,413 - 0.0
532,415 - 0.4
532,419 - 0.3
532,426 + 0.1
532,428 - 1.1
532,433 + 0.3
532,435 + 0.5
532,442 + 0.2
532,444 + 0.7
532,573 - -0.3
532,576 - -0.1
532,578 - -0.4
532,580 + 1.1
532,714 + -1.7
532,717 - 0.6
532,718 + 0.6
532,720 - 1.2
532,741 + -0.0
533,032 + 9903 mRNA_1535 0.12 0.7
533,325 + 9903 mRNA_1535 0.28 -0.7
533,615 + 9903 mRNA_1535 0.43 2.0
534,236 + 9903 mRNA_1535 0.78 1.0
534,476 + 0.5
534,492 - 0.6
534,505 - 1.4
534,751 - -0.6
534,774 + -1.1
535,529 - 9904 mRNA_1536 0.29 0.3
535,554 + 9904 mRNA_1536 0.30 0.3