Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1515

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1514: 9882 - K07050 AARSD1, ALAX misacylated tRNA(Ala) deacylase, at 486604 to 488267 9882 mRNA_1515: 9883 - HMMPfam-Up-regulated During Septation-PF15456,SUPERFAMILY--SSF57997, at 488446 to 491742 9883 mRNA_1516: 9884 - BLAST transmembrane ATP-binding protein ABC transporter [Rh..., at 492148 to 493899 9884

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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487,453 - 9882 mRNA_1514 0.51 0.8
487,913 - 9882 mRNA_1514 0.79 0.9
488,058 + 9882 mRNA_1514 0.87 0.3
488,073 + 9882 mRNA_1514 0.88 -0.2
488,166 - 0.2
488,185 - -0.2
488,341 - 1.3
488,372 + 0.6
488,382 - 1.0
488,493 - -0.5
488,498 - 1.5
488,500 - -0.2
488,505 + 0.1
488,513 + 0.8
488,521 + 1.9
488,647 + 0.4
488,793 + 9883 mRNA_1515 0.11 -0.7
488,822 + 9883 mRNA_1515 0.11 -0.3
488,926 + 9883 mRNA_1515 0.15 1.4
489,243 + 9883 mRNA_1515 0.24 0.8
489,275 + 9883 mRNA_1515 0.25 0.5
489,584 - 9883 mRNA_1515 0.35 -0.5
489,709 - 9883 mRNA_1515 0.38 0.3
489,788 + 9883 mRNA_1515 0.41 1.3
490,130 + 9883 mRNA_1515 0.51 0.6
490,246 - 9883 mRNA_1515 0.55 1.1
490,385 - 9883 mRNA_1515 0.59 -2.1
490,566 - 9883 mRNA_1515 0.64 0.3
490,610 - 9883 mRNA_1515 0.66 0.4
491,018 + 9883 mRNA_1515 0.78 -0.5
491,321 - 9883 mRNA_1515 0.87 0.1
491,327 - 9883 mRNA_1515 0.87 0.1
491,483 - -0.1
491,490 + 0.0
491,616 - 1.3
491,636 - -0.4
491,753 + -0.1
491,756 - -0.5
491,758 + -0.4
491,759 + 0.1
491,896 - 2.1
491,900 + 0.9
491,904 - -0.5
491,910 - -0.2
491,912 + -0.1
491,932 - 0.6
492,072 + 1.3
492,074 - 2.0
492,076 - -0.3
492,128 + -0.8
492,133 - -0.5
492,204 - -0.4