Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1510

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1509: 9877 - KOG1471 Phosphatidylinositol transfer protein SEC14 and related proteins, at 474155 to 475425 9877 mRNA_1510: 9878 - KOG2695 WD40 repeat protein, at 476183 to 478334 9878 mRNA_1511: 9879 - KOG2136 Transcriptional regulators binding to the GC-rich sequences, at 478426 to 481591 9879

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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475,479 + 1.8
475,910 + 0.0
475,916 + -0.4
476,024 - 0.7
476,078 - 1.0
476,086 + 0.5
476,179 + 0.6
476,810 - 9878 mRNA_1510 0.29 -0.5
477,180 - 9878 mRNA_1510 0.46 0.3
477,475 + 9878 mRNA_1510 0.60 -0.5
477,778 + 9878 mRNA_1510 0.74 0.1
478,353 - 0.6