Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1490

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1489: 9857 - K09022 ridA, tdcF 2-iminobutanoate/2-iminopropanoate deaminase, at 428243 to 429095 9857 mRNA_1490: 9858 - ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SUPERFAMILY--SSF57701, at 429512 to 431122 9858

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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428,793 + 9857 mRNA_1489 0.64 -0.5
428,802 + 9857 mRNA_1489 0.66 0.3
429,226 + 1.2
429,364 - -0.5
429,381 + -0.2
429,389 - 1.6
429,389 + 0.7
429,393 - 0.0
429,413 + 2.0
429,513 - -0.1
429,567 - 0.1
429,809 + 9858 mRNA_1490 0.18 0.3
429,962 - 9858 mRNA_1490 0.28 0.4
429,995 - 9858 mRNA_1490 0.30 1.2
430,109 - 9858 mRNA_1490 0.37 0.6
430,578 + 9858 mRNA_1490 0.66 -0.1
430,684 - 9858 mRNA_1490 0.73 0.3
430,685 + 9858 mRNA_1490 0.73 0.5
430,849 - 9858 mRNA_1490 0.83 0.9
430,881 - 9858 mRNA_1490 0.85 0.4
431,002 + 0.7
431,008 + 1.3
431,010 - 1.6
431,014 - -0.4
431,014 - 0.9
431,160 + -1.1
431,165 - -0.0
431,180 - 0.3
431,183 + 0.4
431,186 - 1.4
431,190 + 0.2
431,200 - 0.9
431,204 + 0.1
431,207 + 0.1
431,208 + 0.4
431,216 + -0.4
431,219 - 0.6
431,222 + 0.9
431,223 + 0.4
431,230 + 1.6
431,231 - 0.5
431,235 + 0.7
431,242 + -0.7
431,250 - -1.9
431,250 - 0.1
431,250 + 0.6
431,269 + -0.1
431,292 - 0.2
431,293 + 1.2
431,293 + 0.8
431,303 - -0.3
431,337 - -0.2
431,340 + 0.4
431,342 + 0.4
431,395 - 0.4
431,486 + 0.0
431,496 + 0.1
431,498 - -0.9
431,519 - 0.3
431,521 + 0.1
431,529 + 0.3
431,569 + -0.1
431,640 - -1.4
431,643 + 0.4
431,647 + 0.8
431,653 + -0.0
431,658 - 0.9
431,797 - 2.2
431,807 + 0.6
431,918 + 0.7
431,936 - 1.1
431,957 + 1.1
432,095 + -0.1