Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1445

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1444: 9812 - KOG4173 Alpha-SNAP protein, at 294219 to 295156 9812 mRNA_1445: 9813 - K20045 ITSN intersectin, at 295295 to 301799 9813

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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294,320 - 9812 mRNA_1444 0.11 1.0
294,323 - 9812 mRNA_1444 0.11 0.7
294,485 + 9812 mRNA_1444 0.28 -0.5
294,601 - 9812 mRNA_1444 0.41 0.5
294,743 - 9812 mRNA_1444 0.56 0.4
294,744 - 9812 mRNA_1444 0.56 -0.2
294,907 - 9812 mRNA_1444 0.73 1.0
295,199 - 1.5
295,613 - 0.4
295,619 - 0.3
295,909 - 0.3
295,931 - -0.5
295,948 - 9813 mRNA_1445 0.10 0.1
295,948 - 9813 mRNA_1445 0.10 -1.5
296,369 + 9813 mRNA_1445 0.17 0.5
296,490 + 9813 mRNA_1445 0.18 -0.3
296,677 + 9813 mRNA_1445 0.21 1.8
296,682 + 9813 mRNA_1445 0.21 -0.4
297,395 + 9813 mRNA_1445 0.32 0.0
297,602 - 9813 mRNA_1445 0.35 0.1
297,845 + 9813 mRNA_1445 0.39 0.4
298,121 - 9813 mRNA_1445 0.43 0.4
298,475 - 9813 mRNA_1445 0.49 -0.3
299,474 - 9813 mRNA_1445 0.64 0.4
299,857 + 9813 mRNA_1445 0.70 -0.8
299,929 - 9813 mRNA_1445 0.71 0.8
300,259 - 9813 mRNA_1445 0.76 0.3
301,371 + 0.3
301,391 + 0.5
301,527 - 0.1
301,647 - 0.1
301,666 + 1.1
301,689 - 0.3
301,694 + -0.5
301,695 - -0.2
301,697 + 0.2
301,703 - 0.6
301,785 - -0.3
301,793 - 0.0
301,801 - 0.3
301,804 - 0.5
301,810 - -0.1
301,817 + 1.4
301,822 + -0.0
301,822 + -0.1
301,831 - 0.7
301,838 - -0.4
301,846 - 0.0
301,848 + 0.7
301,938 - 0.1
301,972 - 0.7
302,127 - 0.2
302,264 + 0.9
302,284 + 0.7
302,403 - 0.5
302,446 - 0.1
302,461 + -0.4
302,484 + 0.3
302,502 - 0.0
302,512 - 0.0
302,535 - 0.5
302,587 - -0.6
302,594 + -0.1
302,650 + 0.3
302,682 + 0.2
302,704 - 0.9
302,726 + 0.4
302,740 - 1.4
302,797 + -1.2