Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1431

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1430: 9798 - KOG4205 RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1, at 264327 to 265821 9798 mRNA_1431: 9799 - Hypothetical Protein, at 266080 to 266508 9799 mRNA_1432: 9800 - K01653 E2.2.1.6S, ilvH, ilvN acetolactate synthase I/III small subunit, at 267491 to 268796 9800

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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265,406 - 9798 mRNA_1430 0.72 -0.3
265,563 - 9798 mRNA_1430 0.83 1.7
265,684 - 0.3
265,722 - 0.4
265,847 - 0.8
265,876 + 0.3
265,889 - 0.2
265,890 - -0.3
265,894 + 0.8
265,914 + -0.5
266,018 - 0.0
266,036 - 0.0
266,188 + 9799 mRNA_1431 0.25 0.2
266,188 + 9799 mRNA_1431 0.25 -0.2
266,339 - 9799 mRNA_1431 0.60 -0.2
266,463 - 9799 mRNA_1431 0.89 0.2
266,464 + 9799 mRNA_1431 0.90 0.2
266,471 - -0.7
266,501 - 1.1
266,506 + -0.2
266,616 + 0.8
266,621 + 1.5
266,634 + 0.3
266,693 - -0.1
266,759 - 1.3
266,760 - 0.3
266,913 - 1.1
266,919 + 0.5
266,927 - 0.2
266,936 - 2.7
267,050 - 0.1
267,052 - 0.5
267,065 + 0.5
267,091 + 0.3
267,091 + -0.1
267,095 + -0.2
267,095 + -0.3
267,103 + 0.5
267,116 + 1.0
267,241 + 0.1
267,251 + -0.2
267,264 + 0.5
267,267 + 0.9
267,274 - 0.3
267,281 + 0.5
267,282 + 0.2
267,388 - 0.3