Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1354

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1353: 9721 - HMMPfam-Starch binding domain-PF00686,ProSiteProfiles-CBM20 (carbohydrate binding type-20) domain profile.-PS51166,SMART-Starch binding domain-SM01065,SUPERFAMILY--SSF49452, at 67980 to 69503 9721 mRNA_1354: 9722 - Hypothetical Protein, at 69556 to 71202 9722 mRNA_1355: 9723 - SUPERFAMILY--SSF50685, at 72198 to 73021 9723

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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68,589 + 9721 mRNA_1353 0.40 0.3
68,662 + 9721 mRNA_1353 0.45 -0.1
68,678 - 9721 mRNA_1353 0.46 -0.3
68,841 - 9721 mRNA_1353 0.56 -0.0
68,922 + 9721 mRNA_1353 0.62 1.0
69,141 + 9721 mRNA_1353 0.76 0.6
69,287 - 9721 mRNA_1353 0.86 0.6
69,565 + 0.6
69,623 - 1.9
69,805 - 9722 mRNA_1354 0.15 0.3
69,830 - 9722 mRNA_1354 0.17 0.5
69,849 + 9722 mRNA_1354 0.18 0.1
69,905 - 9722 mRNA_1354 0.21 0.1
69,940 - 9722 mRNA_1354 0.23 1.9
70,447 + 9722 mRNA_1354 0.54 -0.1
70,452 - 9722 mRNA_1354 0.54 0.0
70,532 - 9722 mRNA_1354 0.59 0.3
70,539 + 9722 mRNA_1354 0.60 0.4
70,546 + 9722 mRNA_1354 0.60 -0.3
70,729 + 9722 mRNA_1354 0.71 1.0
70,989 + 9722 mRNA_1354 0.87 0.3
71,005 - 9722 mRNA_1354 0.88 0.2
71,103 + -1.2
71,144 + 0.4
71,234 - 0.1
71,301 + 0.3
71,420 - -0.4
71,423 + 1.1
71,448 - 0.4
71,556 + -0.3
71,591 + -0.4
71,612 - 0.5
71,721 + 0.1
71,735 - 0.6
71,873 + 0.0
72,058 + -0.2
72,155 + -0.6
72,158 + 0.6