Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1353

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1352: 9720 - Hypothetical Protein, at 66471 to 67100 9720 mRNA_1353: 9721 - HMMPfam-Starch binding domain-PF00686,ProSiteProfiles-CBM20 (carbohydrate binding type-20) domain profile.-PS51166,SMART-Starch binding domain-SM01065,SUPERFAMILY--SSF49452, at 67980 to 69503 9721 mRNA_1354: 9722 - Hypothetical Protein, at 69556 to 71202 9722

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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67,027 - 9720 mRNA_1352 0.88 1.2
67,035 + 9720 mRNA_1352 0.90 1.4
67,052 - -0.7
67,314 - 0.4
67,363 - 0.2
67,365 - -0.1
67,372 + -0.1
67,498 - 0.6
67,510 - 0.0
67,514 + -0.1
67,597 + 1.6
67,644 - 1.4
67,645 + 0.8
67,714 + 0.5
67,758 + 0.1
67,775 + -0.1
67,780 + 1.4
67,785 - 0.4
67,787 - -0.4
67,794 - -0.4
67,799 - 0.8
67,799 - 2.2
67,800 + 0.2
67,804 + 0.1
67,814 - 0.5
67,814 - 0.2
67,817 - 1.3
67,822 + 1.5
67,834 - 0.1
67,898 - 0.8
67,943 + 1.0
67,946 + -0.8
67,964 + 1.1
67,989 + 0.0
67,999 - 0.2
68,303 + 9721 mRNA_1353 0.21 0.1
68,397 - 9721 mRNA_1353 0.27 0.3
68,408 - 9721 mRNA_1353 0.28 1.1
68,520 + 9721 mRNA_1353 0.35 -0.7
68,589 + 9721 mRNA_1353 0.40 0.3
68,662 + 9721 mRNA_1353 0.45 -0.1
68,678 - 9721 mRNA_1353 0.46 -0.3
68,841 - 9721 mRNA_1353 0.56 -0.0
68,922 + 9721 mRNA_1353 0.62 1.0
69,141 + 9721 mRNA_1353 0.76 0.6
69,287 - 9721 mRNA_1353 0.86 0.6
69,565 + 0.6
69,623 - 1.9
69,805 - 9722 mRNA_1354 0.15 0.3
69,830 - 9722 mRNA_1354 0.17 0.5
69,849 + 9722 mRNA_1354 0.18 0.1
69,905 - 9722 mRNA_1354 0.21 0.1
69,940 - 9722 mRNA_1354 0.23 1.9
70,447 + 9722 mRNA_1354 0.54 -0.1
70,452 - 9722 mRNA_1354 0.54 0.0