Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1345

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1344: 9712 - K06063 SNW1, SKIIP, SKIP SNW domain-containing protein 1, at 45254 to 47593 9712 mRNA_1345: 9713 - KOG2533 Permease of the major facilitator superfamily, at 47713 to 50221 9713 mRNA_1346: 9714 - Hypothetical Protein, at 50487 to 51327 9714

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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47,611 + 0.5
47,616 - 0.4
47,746 - 1.2
47,747 - 0.4
47,751 + 0.0
47,754 - 0.5
47,763 - -1.0
47,764 + 0.3
47,855 + 0.2
47,901 - 0.1
47,907 - 0.6
48,006 - 9713 mRNA_1345 0.12 0.1
48,058 - 9713 mRNA_1345 0.14 0.1
48,095 + 9713 mRNA_1345 0.15 1.6
48,185 + 9713 mRNA_1345 0.19 0.6
48,605 - 9713 mRNA_1345 0.36 0.3
48,606 - 9713 mRNA_1345 0.36 0.3
48,775 - 9713 mRNA_1345 0.42 -0.5
48,906 - 9713 mRNA_1345 0.48 -0.4
48,928 - 9713 mRNA_1345 0.48 -0.5
48,933 - 9713 mRNA_1345 0.49 -0.2
48,936 - 9713 mRNA_1345 0.49 0.1
48,938 - 9713 mRNA_1345 0.49 -0.3
48,945 + 9713 mRNA_1345 0.49 0.7
49,216 - 9713 mRNA_1345 0.60 0.7
49,391 + 9713 mRNA_1345 0.67 -0.1
49,422 + 9713 mRNA_1345 0.68 0.5
49,489 + 9713 mRNA_1345 0.71 1.3
49,497 - 9713 mRNA_1345 0.71 0.9
49,516 + 9713 mRNA_1345 0.72 1.6
49,602 - 9713 mRNA_1345 0.75 1.3
49,648 - 9713 mRNA_1345 0.77 0.5
49,818 - 9713 mRNA_1345 0.84 -0.0
49,820 + 9713 mRNA_1345 0.84 0.5
49,921 - 9713 mRNA_1345 0.88 0.9
49,962 - 9713 mRNA_1345 0.90 0.1
50,203 + 1.1
50,239 + 0.8
50,432 + 0.2
50,481 + 1.1
50,484 - 0.9
50,517 + 1.1
50,688 + 9714 mRNA_1346 0.24 0.6
50,711 + 9714 mRNA_1346 0.27 0.7
50,725 + 9714 mRNA_1346 0.28 2.4
50,821 - 9714 mRNA_1346 0.40 0.3
50,856 + 9714 mRNA_1346 0.44 -0.1
51,021 - 9714 mRNA_1346 0.63 0.7
51,118 + 9714 mRNA_1346 0.75 0.6