Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1332

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1331: 9699 - KOG2273 Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins, at 11969 to 15219 9699 mRNA_1332: 9700 - K00232 E1.3.3.6, ACOX1, ACOX3 acyl-CoA oxidase, at 15782 to 19108 9700

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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15,354 - 0.2
15,355 - 0.1
15,359 + -0.3
15,512 - -1.2
15,519 + -0.4
15,580 + -0.0
15,637 + -0.2
15,648 + 0.3
15,654 - 0.3
15,656 - -0.1
15,657 + -0.4
15,663 - 0.3
15,665 - 0.2
15,665 + -0.4
15,667 + 1.1
15,671 + 1.6
15,683 + 0.4
15,684 + -0.1
15,699 + 0.2
15,713 + 1.1
15,792 - -0.1
15,857 + 0.8
15,996 - -0.4
16,078 + 0.5
16,087 - 0.5
16,089 + 1.4
16,122 + 9700 mRNA_1332 0.10 -0.2
16,280 - 9700 mRNA_1332 0.15 0.2
16,363 - 9700 mRNA_1332 0.17 0.9
16,505 - 9700 mRNA_1332 0.22 2.1
16,505 - 9700 mRNA_1332 0.22 -0.1
16,546 + 9700 mRNA_1332 0.23 0.3
16,581 + 9700 mRNA_1332 0.24 0.6
16,581 + 9700 mRNA_1332 0.24 -0.2
16,899 + 9700 mRNA_1332 0.34 0.8
16,980 - 9700 mRNA_1332 0.36 0.3
17,024 - 9700 mRNA_1332 0.37 0.3
17,288 - 9700 mRNA_1332 0.45 1.2
17,370 - 9700 mRNA_1332 0.48 0.6
17,548 + 9700 mRNA_1332 0.53 0.3
17,574 - 9700 mRNA_1332 0.54 0.7
17,841 - 9700 mRNA_1332 0.62 2.1
17,865 + 9700 mRNA_1332 0.63 -0.8
17,957 + 9700 mRNA_1332 0.65 0.7
18,002 + 9700 mRNA_1332 0.67 -1.7
18,511 - 9700 mRNA_1332 0.82 0.9
18,550 - 9700 mRNA_1332 0.83 0.3
18,573 + 9700 mRNA_1332 0.84 1.0
18,882 - -0.1
19,111 - -0.0
19,235 - 0.6
19,262 - 0.8
19,291 + 0.1
19,296 - 0.0
19,304 - -0.1
19,406 - -1.5
19,412 - 1.2
19,414 - 0.1
19,420 - 1.5
19,422 + 0.6
19,434 - -0.5
19,442 + 0.6
19,452 + 0.1
19,456 - 0.1
19,461 - 0.2
19,480 - 0.7
19,494 + 1.2
19,495 - 0.3
19,496 + 0.6
19,596 - 0.0
19,625 + -0.2
19,626 + -0.3
19,708 - -0.2
19,769 - 1.8
19,769 - 0.6
19,856 + 0.6
19,859 + 1.1
19,899 - 0.2