Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1260

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1259: 9627 - K10887 DCLRE1C, ARTEMIS, SCIDA DNA cross-link repair 1C protein, at 771743 to 774831 9627 mRNA_1260: 9628 - Hypothetical Protein, at 775033 to 777519 9628

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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774,079 + 9627 mRNA_1259 0.76 0.1
774,179 - 9627 mRNA_1259 0.79 0.6
774,187 + 9627 mRNA_1259 0.79 0.2
774,187 + 9627 mRNA_1259 0.79 0.1
774,313 - 9627 mRNA_1259 0.83 0.3
774,322 + 9627 mRNA_1259 0.83 0.3
774,342 + 9627 mRNA_1259 0.84 -0.1
774,450 + 9627 mRNA_1259 0.88 0.1
774,680 - -0.1
775,001 + 0.2
775,061 - 0.1
775,290 + 9628 mRNA_1260 0.10 0.6
775,449 + 9628 mRNA_1260 0.17 -0.1
775,509 + 9628 mRNA_1260 0.19 0.7
775,660 - 9628 mRNA_1260 0.25 -1.0
775,701 + 9628 mRNA_1260 0.27 0.6
775,730 + 9628 mRNA_1260 0.28 0.3
775,845 - 9628 mRNA_1260 0.33 -0.6
775,958 + 9628 mRNA_1260 0.37 0.2
775,981 + 9628 mRNA_1260 0.38 0.7
776,404 + 9628 mRNA_1260 0.55 0.1
776,407 - 9628 mRNA_1260 0.55 -0.2
776,508 - 9628 mRNA_1260 0.59 -0.0
776,578 + 9628 mRNA_1260 0.62 0.4
776,580 - 9628 mRNA_1260 0.62 0.2
776,689 - 9628 mRNA_1260 0.67 -0.7
776,690 - 9628 mRNA_1260 0.67 -0.1
776,697 - 9628 mRNA_1260 0.67 0.2
776,701 - 9628 mRNA_1260 0.67 0.3
776,849 + 9628 mRNA_1260 0.73 0.4
776,902 + 9628 mRNA_1260 0.75 0.3
776,992 - 9628 mRNA_1260 0.79 0.3
776,993 + 9628 mRNA_1260 0.79 0.4
777,160 + 9628 mRNA_1260 0.86 -0.1
777,251 - 9628 mRNA_1260 0.89 0.1
777,269 + 9628 mRNA_1260 0.90 -0.0
777,280 - -0.7
777,288 + 0.0
777,567 - 0.7
777,584 - -0.2
778,515 - -0.4