Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1259

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1258: 9626 - Hypothetical Protein, at 770373 to 771317 9626 mRNA_1259: 9627 - K10887 DCLRE1C, ARTEMIS, SCIDA DNA cross-link repair 1C protein, at 771743 to 774831 9627 mRNA_1260: 9628 - Hypothetical Protein, at 775033 to 777519 9628

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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771,447 + 0.2
771,577 - -0.7
771,584 + -0.6
771,587 + 0.7
771,719 + -0.0
772,016 + -0.1
772,145 + 9627 mRNA_1259 0.13 0.3
772,343 + 9627 mRNA_1259 0.19 0.7
772,345 - 9627 mRNA_1259 0.19 -0.1
772,704 + 9627 mRNA_1259 0.31 0.6
772,740 - 9627 mRNA_1259 0.32 0.6
772,994 - 9627 mRNA_1259 0.40 0.5
773,029 + 9627 mRNA_1259 0.42 -0.0
773,246 - 9627 mRNA_1259 0.49 -0.5
773,318 - 9627 mRNA_1259 0.51 0.1
773,451 + 9627 mRNA_1259 0.55 -0.3
773,588 - 9627 mRNA_1259 0.60 0.6
773,717 - 9627 mRNA_1259 0.64 0.6
773,774 - 9627 mRNA_1259 0.66 0.5
773,829 - 9627 mRNA_1259 0.68 0.4
773,833 + 9627 mRNA_1259 0.68 0.6
774,079 + 9627 mRNA_1259 0.76 0.1
774,179 - 9627 mRNA_1259 0.79 0.6
774,187 + 9627 mRNA_1259 0.79 0.2
774,187 + 9627 mRNA_1259 0.79 0.1
774,313 - 9627 mRNA_1259 0.83 0.3
774,322 + 9627 mRNA_1259 0.83 0.3
774,342 + 9627 mRNA_1259 0.84 -0.1
774,450 + 9627 mRNA_1259 0.88 0.1
774,680 - -0.1
775,001 + 0.2
775,061 - 0.1
775,290 + 9628 mRNA_1260 0.10 0.6
775,449 + 9628 mRNA_1260 0.17 -0.1
775,509 + 9628 mRNA_1260 0.19 0.7
775,660 - 9628 mRNA_1260 0.25 -1.0
775,701 + 9628 mRNA_1260 0.27 0.6
775,730 + 9628 mRNA_1260 0.28 0.3