Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1242

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1241: 9609 - K12893 SFRS4_5_6 splicing factor, arginine/serine-rich 4/5/6, at 734372 to 735961 9609 mRNA_1242: 9610 - K01110 PTEN phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN, at 736191 to 738180 9610 mRNA_1243: 9611 - K02493 hemK, prmC, HEMK release factor glutamine methyltransferase, at 738287 to 739305 9611

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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735,255 + 9609 mRNA_1241 0.56 0.6
735,676 + 9609 mRNA_1241 0.82 0.7
735,884 - 0.9
735,966 - 0.8
736,091 + 0.7
736,098 + 0.5
736,116 - 1.5
736,121 - 0.3
736,121 - 0.3
736,398 - 9610 mRNA_1242 0.10 2.1
736,406 - 9610 mRNA_1242 0.11 0.4
736,406 - 9610 mRNA_1242 0.11 -0.0
736,406 - 9610 mRNA_1242 0.11 1.0
736,425 - 9610 mRNA_1242 0.12 0.2
736,433 + 9610 mRNA_1242 0.12 -0.5
736,713 - 9610 mRNA_1242 0.26 1.3
736,846 - 9610 mRNA_1242 0.33 0.4
736,954 - 9610 mRNA_1242 0.38 0.9
737,261 - 9610 mRNA_1242 0.54 0.7
737,275 + 9610 mRNA_1242 0.54 0.1
737,909 + 9610 mRNA_1242 0.86 0.7
737,973 - 9610 mRNA_1242 0.90 -0.5
737,973 - 9610 mRNA_1242 0.90 0.1
738,159 + -0.4
738,167 - -0.5
738,170 + 0.3
738,508 - 9611 mRNA_1243 0.22 -0.8