Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1227

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1226: 9594 - K01262 pepP Xaa-Pro aminopeptidase, at 693784 to 696236 9594 mRNA_1227: 9595 - KOG1318 Helix loop helix transcription factor EB, at 696629 to 699042 9595 mRNA_1228: 9596 - K00693 GYS glycogen synthase, at 699587 to 703104 9596

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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695,730 - 9594 mRNA_1226 0.79 0.5
696,201 - 0.1
696,304 + -0.0
696,348 - -0.3
696,602 - 0.5
696,809 + 1.3
696,818 - 0.5
696,940 - 9595 mRNA_1227 0.13 0.1
696,948 + 9595 mRNA_1227 0.13 -0.5
696,965 + 9595 mRNA_1227 0.14 1.6
697,024 - 9595 mRNA_1227 0.16 1.4
697,539 - 9595 mRNA_1227 0.38 0.0
697,747 + 9595 mRNA_1227 0.46 0.4
698,579 - 9595 mRNA_1227 0.81 -0.1
699,044 - 1.2
699,135 + 0.2
699,138 + -0.7
699,169 + 1.5
699,250 - 1.0
699,253 - 0.3
699,262 + 0.6
699,263 + -0.3
699,263 - -0.1
699,278 + -0.3
699,326 - 0.5
699,346 + 0.4
699,356 - -0.0
699,358 - -0.5
699,368 - -0.3
699,377 + -0.1
699,379 + 0.6
699,389 - -1.0
699,409 - -0.9
699,409 + -0.1
699,423 - -0.5
699,423 - 1.7
699,425 - 0.7
699,432 - 1.2
699,449 - -1.0
699,473 + -0.4
699,475 + -1.0
699,476 - -0.5
699,487 + 0.1
699,487 - 0.9
699,502 + 0.1
699,504 + 0.7
699,519 - 1.1
699,520 - 0.1
699,531 - 0.4
699,533 - 0.1
699,534 + -0.3
699,669 + -0.3
699,671 + 0.2
699,677 + 0.3
699,684 + -0.1
699,691 + 1.0
699,698 + 0.2
699,828 + -1.8
699,831 - -0.2
699,831 - 0.1
699,834 - -0.1