Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1225

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1224: 9592 - BLAST catalytic [Ascochyta rabiei], at 690092 to 691295 9592 mRNA_1225: 9593 - KOG2195 Transferrin receptor and related proteins containing the protease-associated (PA) domain, at 691442 to 693362 9593 mRNA_1226: 9594 - K01262 pepP Xaa-Pro aminopeptidase, at 693784 to 696236 9594

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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690,457 + 9592 mRNA_1224 0.30 0.1
690,466 - 9592 mRNA_1224 0.31 0.9
690,594 - 9592 mRNA_1224 0.42 -0.3
690,760 - 9592 mRNA_1224 0.55 -0.0
691,480 + 1.2
691,775 - 9593 mRNA_1225 0.17 -0.3
691,821 - 9593 mRNA_1225 0.20 -0.6
692,070 + 9593 mRNA_1225 0.33 0.5
692,201 - 9593 mRNA_1225 0.40 0.7
692,337 + 9593 mRNA_1225 0.47 -0.6
692,478 - 9593 mRNA_1225 0.54 -0.4
692,502 - 9593 mRNA_1225 0.55 -0.2
692,766 - 9593 mRNA_1225 0.69 -0.8
693,224 + 1.2
693,390 + -0.1
693,395 - 1.3
693,521 - 1.0
693,523 + 0.5
693,587 + -0.0
693,710 + 1.7
693,815 - 0.2
694,254 - 9594 mRNA_1226 0.19 1.4
694,281 + 9594 mRNA_1226 0.20 0.8
694,346 + 9594 mRNA_1226 0.23 -0.6