Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1220

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1219: 9587 - KOG3202 SNARE protein TLG1/Syntaxin 6, at 675233 to 676117 9587 mRNA_1220: 9588 - KOG0254 Predicted transporter (major facilitator superfamily), at 676707 to 679515 9588 mRNA_1221: 9589 - K01810 GPI, pgi glucose-6-phosphate isomerase, at 679841 to 682126 9589

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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676,192 + 1.0
676,343 + 1.1
676,634 - 1.3
676,650 + 0.5
676,651 - 0.1
676,767 + 0.0
676,773 + -0.2
676,787 + 0.1
676,788 + 1.0
676,928 - -0.4
677,196 - 9588 mRNA_1220 0.17 0.8
677,349 + 9588 mRNA_1220 0.23 0.1
677,376 + 9588 mRNA_1220 0.24 0.4
677,627 - 9588 mRNA_1220 0.33 0.3
677,659 + 9588 mRNA_1220 0.34 -0.2
677,671 - 9588 mRNA_1220 0.34 0.1
677,745 + 9588 mRNA_1220 0.37 0.5
677,768 + 9588 mRNA_1220 0.38 1.0
677,823 + 9588 mRNA_1220 0.40 -1.1
678,193 - 9588 mRNA_1220 0.53 -0.8
678,654 + 9588 mRNA_1220 0.69 0.3
678,921 + 9588 mRNA_1220 0.79 -1.3
679,053 - 9588 mRNA_1220 0.84 1.1
679,070 + 9588 mRNA_1220 0.84 1.5
679,177 - 9588 mRNA_1220 0.88 0.9
679,192 + 9588 mRNA_1220 0.88 0.2
679,330 + 1.4
679,365 - 1.1
679,672 + 0.2
679,769 - 1.6
679,770 - 0.5
679,774 - 0.2
679,781 - 1.6
679,791 - 0.1