Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1167

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1166: 9534 - KOG2533 Permease of the major facilitator superfamily, at 554788 to 557060 9534 mRNA_1167: 9535 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 557587 to 560660 9535 mRNA_1168: 9536 - K01474 hyuB N-methylhydantoinase B, at 560884 to 563023 9536

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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556,662 + 9534 mRNA_1166 0.82 2.0
556,761 - 9534 mRNA_1166 0.87 1.0
556,788 - 9534 mRNA_1166 0.88 0.3
556,803 + 9534 mRNA_1166 0.89 0.0
556,807 + 9534 mRNA_1166 0.89 -0.4
556,931 - 1.1
557,108 + 0.1
557,148 - -0.1
557,295 - -0.9
557,371 + -0.8
557,384 + 0.6
557,390 - 1.0
557,396 - 0.6
557,405 + 0.1
557,405 + 0.1
557,508 - -0.1
557,508 - 1.0
557,519 - 0.2
557,536 - 0.9
557,549 + 0.3
557,570 - -0.2
557,578 - 0.6
557,590 - 0.3
557,686 + -0.4
557,692 - 1.1
557,762 + 0.3
558,015 + 9535 mRNA_1167 0.14 1.1
558,156 - 9535 mRNA_1167 0.19 0.1
558,297 - 9535 mRNA_1167 0.23 0.1
558,708 - 9535 mRNA_1167 0.36 0.4
558,724 - 9535 mRNA_1167 0.37 1.5
558,750 + 9535 mRNA_1167 0.38 -0.1
558,867 + 9535 mRNA_1167 0.42 0.3
559,322 + 9535 mRNA_1167 0.56 0.2
559,612 + 9535 mRNA_1167 0.66 1.3
560,200 - 9535 mRNA_1167 0.85 0.6
560,288 - 9535 mRNA_1167 0.88 0.9
560,749 + -0.9
560,755 - 1.5
560,765 + 0.6
560,765 + 0.7
560,908 + -0.3
560,978 - 0.0
561,268 + 9536 mRNA_1168 0.18 0.1
561,406 - 9536 mRNA_1168 0.24 0.1
561,422 + 9536 mRNA_1168 0.25 0.3
561,437 - 9536 mRNA_1168 0.26 0.9
561,464 - 9536 mRNA_1168 0.27 -0.9
561,482 - 9536 mRNA_1168 0.28 0.7