Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1163

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1162: 9530 - SUPERFAMILY--SSF52047, at 547799 to 548923 9530 mRNA_1163: 9531 - KOG1378 Purple acid phosphatase, at 549366 to 551873 9531 mRNA_1164: 9532 - Hypothetical Protein, at 552710 to 552960 9532

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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548,640 - 9530 mRNA_1162 0.75 -0.1
548,649 + 9530 mRNA_1162 0.76 0.8
548,931 + 0.6
548,953 - 0.6
548,960 + 0.3
548,977 + -0.7
549,107 - -0.2
549,116 - -0.1
549,130 + 0.5
549,132 + 1.2
549,245 + 1.2
549,273 + 0.0
549,276 - -0.0
549,295 + -0.3
549,445 + 0.2
549,548 + 0.1
549,581 - 1.4
549,737 + 9531 mRNA_1163 0.15 0.3
549,737 + 9531 mRNA_1163 0.15 0.4
549,855 + 9531 mRNA_1163 0.19 0.5
550,058 + 9531 mRNA_1163 0.28 -0.1
550,306 - 9531 mRNA_1163 0.37 -0.4
550,322 - 9531 mRNA_1163 0.38 0.0
550,331 - 9531 mRNA_1163 0.38 -0.3
550,467 + 9531 mRNA_1163 0.44 1.1
550,472 + 9531 mRNA_1163 0.44 1.2
550,776 + 9531 mRNA_1163 0.56 0.8
551,075 - 9531 mRNA_1163 0.68 -0.7
551,354 - 9531 mRNA_1163 0.79 0.9
551,802 - 0.2
551,900 - -0.9
552,323 + 0.1
552,338 - 0.6
552,354 + -0.0
552,650 + -0.2
552,697 - -0.5
552,701 + 0.9
552,761 + 9532 mRNA_1164 0.20 0.6
552,777 - 9532 mRNA_1164 0.27 0.3
552,788 - 9532 mRNA_1164 0.31 0.8
552,789 - 9532 mRNA_1164 0.31 0.2
552,824 + 9532 mRNA_1164 0.45 0.7
552,848 - 9532 mRNA_1164 0.55 0.5
552,853 + 9532 mRNA_1164 0.57 -0.1