Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1159

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1158: 9526 - Hypothetical Protein, at 533999 to 537881 9526 mRNA_1159: 9527 - HMMPfam-Archaeal ATPase-PF01637,SUPERFAMILY--SSF52540, at 538557 to 540883 9527 mRNA_1160: 9528 - KOG4159 Predicted E3 ubiquitin ligase, at 540916 to 543538 9528

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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537,757 + 0.9
537,854 - 0.6
537,894 - 0.8
538,038 + -0.1
538,041 + 0.6
538,297 + -0.3
538,306 + -0.1
538,337 - 1.0
538,499 + 0.0
538,513 - -0.6
538,513 - 0.8
538,516 - -0.2
538,646 - 0.3
538,661 - 0.0
538,668 + -0.0
538,668 + 0.8
539,075 - 9527 mRNA_1159 0.22 1.1
539,246 - 9527 mRNA_1159 0.30 -1.1
539,378 + 9527 mRNA_1159 0.35 1.5
539,772 - 9527 mRNA_1159 0.52 -0.0
539,930 - 9527 mRNA_1159 0.59 1.1
539,988 + 9527 mRNA_1159 0.61 1.3
540,016 - 9527 mRNA_1159 0.63 1.1
540,047 - 9527 mRNA_1159 0.64 0.3
540,091 - 9527 mRNA_1159 0.66 0.0
540,239 - 9527 mRNA_1159 0.72 0.1
540,278 + 9527 mRNA_1159 0.74 0.7
540,284 - 9527 mRNA_1159 0.74 0.5
540,366 + 9527 mRNA_1159 0.78 0.1
540,401 - 9527 mRNA_1159 0.79 0.3
540,471 - 9527 mRNA_1159 0.82 -0.8
540,562 + 9527 mRNA_1159 0.86 -0.3
540,650 - 9527 mRNA_1159 0.90 0.4
540,777 + 1.0
540,849 + 0.3
540,937 - -1.0