Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1124

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1123: 9491 - K00078 DHDH dihydrodiol dehydrogenase / D-xylose 1-dehydrogenase (NADP), at 456532 to 457918 9491 mRNA_1124: 9492 - K09613 COPS5, CSN5 COP9 signalosome complex subunit 5, at 458374 to 459990 9492 mRNA_1125: 9493 - K20465 OSBPL9_10_11, ORP9_10_11 oxysterol-binding protein-related protein 9/10/11, at 460316 to 462771 9493

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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457,469 - 9491 mRNA_1123 0.68 0.8
457,602 + 9491 mRNA_1123 0.77 -2.0
457,609 - 9491 mRNA_1123 0.78 0.0
457,622 - 9491 mRNA_1123 0.79 -0.3
457,910 - 0.1
457,916 + 1.2
457,917 + 0.2
458,059 - -0.2
458,075 - 0.2
458,080 + -0.1
458,088 + -0.2
458,095 - 2.2
458,103 - 0.6
458,112 + 4.2
458,200 + 1.9
458,220 - -0.4
458,223 + -0.0
458,229 + -0.8
458,229 + 1.4
458,375 + 0.6
458,376 + 1.5
458,409 - 0.2
458,654 + 9492 mRNA_1124 0.17 -0.6
458,798 + 9492 mRNA_1124 0.26 -0.3
458,931 + 9492 mRNA_1124 0.34 -0.9
459,172 - 9492 mRNA_1124 0.49 -0.1
459,174 + 9492 mRNA_1124 0.49 -0.6
459,403 + 9492 mRNA_1124 0.64 0.2
459,958 - 0.3
459,988 - 0.9
460,185 - 0.3
460,255 + 0.9
460,419 - 1.3
460,556 - 0.0