Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1116

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1115: 9483 - SUPERFAMILY--SSF52047, at 439344 to 441081 9483 mRNA_1116: 9484 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 441335 to 443528 9484 mRNA_1117: 9485 - K13102 KIN DNA/RNA-binding protein KIN17, at 443661 to 444962 9485

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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440,360 - 9483 mRNA_1115 0.58 -0.3
440,362 - 9483 mRNA_1115 0.59 1.7
440,387 + 9483 mRNA_1115 0.60 0.1
440,577 + 9483 mRNA_1115 0.71 0.2
440,616 + 9483 mRNA_1115 0.73 1.6
440,750 - 9483 mRNA_1115 0.81 0.1
440,777 + 9483 mRNA_1115 0.82 0.6
440,944 - -1.0
441,080 + 0.2
441,088 - -0.2
441,179 - 0.4
441,233 + 0.8
441,339 + 0.0
441,359 - 1.0
441,360 - 0.2
441,396 - 0.4
441,488 + -0.2
441,511 - 1.3
441,568 + 9484 mRNA_1116 0.11 -0.6
441,569 - 9484 mRNA_1116 0.11 1.4
441,576 - 9484 mRNA_1116 0.11 0.9
441,662 - 9484 mRNA_1116 0.15 0.8
441,668 + 9484 mRNA_1116 0.15 0.9
442,104 - 9484 mRNA_1116 0.35 1.1
442,122 - 9484 mRNA_1116 0.36 0.1
442,151 + 9484 mRNA_1116 0.37 0.1
442,238 + 9484 mRNA_1116 0.41 -0.5
442,317 + 9484 mRNA_1116 0.45 0.5
442,439 - 9484 mRNA_1116 0.50 -0.1
442,808 + 9484 mRNA_1116 0.67 0.6
442,844 - 9484 mRNA_1116 0.69 0.9
442,859 + 9484 mRNA_1116 0.69 -0.2
443,179 + 9484 mRNA_1116 0.84 -0.4
443,282 - 9484 mRNA_1116 0.89 0.3
443,442 + -0.7
443,565 - 0.3
443,576 - -0.4