Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1066

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1065: 9433 - Hypothetical Protein, at 318251 to 319455 9433 mRNA_1066: 9434 - KOG1383 Glutamate decarboxylase/sphingosine phosphate lyase, at 320131 to 322252 9434 mRNA_1067: 9435 - K01580 E4.1.1.15, gadB, gadA, GAD glutamate decarboxylase, at 323098 to 325825 9435

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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319,586 + 0.6
319,669 - 0.9
319,690 + 1.2
319,691 + 0.9
319,744 + -1.3
319,766 - -0.4
319,783 + 0.2
319,802 + -0.3
319,836 - 0.1
319,853 - 0.6
319,859 + 0.5
319,866 - 0.1
319,868 - 0.1
319,953 + -0.1
320,120 - 1.1
320,239 - -0.4
320,249 - 1.3
320,273 + -0.1
320,303 + 0.7
320,381 + 9434 mRNA_1066 0.12 0.2
320,387 + 9434 mRNA_1066 0.12 -1.1
320,445 - 9434 mRNA_1066 0.15 -0.5
320,445 + 9434 mRNA_1066 0.15 -0.3
320,504 + 9434 mRNA_1066 0.18 0.6
320,508 - 9434 mRNA_1066 0.18 -0.7
320,669 + 9434 mRNA_1066 0.25 0.6
321,129 + 9434 mRNA_1066 0.47 0.5
321,162 - 9434 mRNA_1066 0.49 0.3
321,202 + 9434 mRNA_1066 0.50 0.3
321,285 - 9434 mRNA_1066 0.54 1.2
321,292 + 9434 mRNA_1066 0.55 0.6
321,292 + 9434 mRNA_1066 0.55 1.0
321,316 + 9434 mRNA_1066 0.56 2.0
321,434 + 9434 mRNA_1066 0.61 2.0
321,493 - 9434 mRNA_1066 0.64 0.1
321,629 - 9434 mRNA_1066 0.71 0.6
321,656 - 9434 mRNA_1066 0.72 1.9
321,750 - 9434 mRNA_1066 0.76 0.2
321,758 - 9434 mRNA_1066 0.77 -0.1
321,936 + 9434 mRNA_1066 0.85 0.0
322,024 - 9434 mRNA_1066 0.89 1.3
322,053 - -0.3
322,177 + 0.6
322,239 - 0.5
322,253 + 1.6
322,531 + -0.1
322,591 - 1.0
322,695 - -0.3
322,837 + 0.9
322,961 + 1.5
323,113 + 0.3