Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1052

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1051: 9419 - SUPERFAMILY--SSF54928, at 277584 to 281665 9419 mRNA_1052: 9420 - K10896 FANCM fanconi anemia group M protein, at 282030 to 286830 9420 mRNA_1053: 9421 - KOG3856 Uncharacterized conserved protein, at 287075 to 287902 9421

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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281,194 - 9419 mRNA_1051 0.88 0.9
281,482 - 0.6
281,640 + 0.9
281,799 - -0.3
281,809 - 0.1
281,815 - -0.2
281,817 + 1.7
281,819 - -0.2
281,841 - 1.1
281,932 - 1.4
281,951 - 0.7
281,966 - 2.0
281,986 + 1.3
282,006 + 0.3
282,080 + -0.2
282,129 - -0.7
282,161 + 0.5
282,407 + 1.1
282,438 + -0.2
282,494 + 0.6
282,502 + 0.1
282,574 - 9420 mRNA_1052 0.11 0.1
283,148 - 9420 mRNA_1052 0.23 0.7
283,283 - 9420 mRNA_1052 0.26 1.4
283,298 + 9420 mRNA_1052 0.26 0.3
283,496 + 9420 mRNA_1052 0.31 2.9
283,515 - 9420 mRNA_1052 0.31 0.3
283,689 + 9420 mRNA_1052 0.35 0.3
283,772 + 9420 mRNA_1052 0.36 -0.0
284,028 + 9420 mRNA_1052 0.42 1.5
284,123 - 9420 mRNA_1052 0.44 1.8
284,178 + 9420 mRNA_1052 0.45 -0.6
284,306 - 9420 mRNA_1052 0.47 1.5
284,309 - 9420 mRNA_1052 0.47 0.2
284,421 - 9420 mRNA_1052 0.50 -0.4
284,441 + 9420 mRNA_1052 0.50 -0.5
284,818 - 9420 mRNA_1052 0.58 0.8
284,899 + 9420 mRNA_1052 0.60 0.4
285,019 + 9420 mRNA_1052 0.62 0.2
285,327 + 9420 mRNA_1052 0.69 0.2
285,402 + 9420 mRNA_1052 0.70 0.3
285,801 + 9420 mRNA_1052 0.79 0.1
286,049 + 9420 mRNA_1052 0.84 1.6
286,140 - 9420 mRNA_1052 0.86 0.1
286,200 + 9420 mRNA_1052 0.87 0.8
286,212 + 9420 mRNA_1052 0.87 0.4
286,321 + 9420 mRNA_1052 0.89 1.3
286,664 - 0.7
286,738 - 1.8
286,768 - 0.3
286,813 - -0.7
286,946 + 0.1
287,085 + 0.8