Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1028

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1027: 9395 - Hypothetical Protein, at 235522 to 235827 9395 mRNA_1028: 9396 - HMMPfam-Domain of unknown function (DUF2411)-PF10304,SUPERFAMILY--SSF48371, at 236228 to 240194 9396 mRNA_1029: 9397 - SMART-N-terminal domain of CBF1 interacting co-repressor CIR-SM01083, at 240232 to 241544 9397

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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235,271 - 0.2
235,484 + 1.5
235,488 + 0.7
235,492 - 0.1
235,594 - 9395 mRNA_1027 0.24 -0.1
235,783 - 9395 mRNA_1027 0.85 0.4
235,938 + -0.9
236,028 + 0.2
236,031 - 0.6
236,031 - -0.1
236,034 + -0.3
236,047 + -0.1
236,193 + 1.9
236,344 + 0.3
236,358 + 1.0
236,913 + 9396 mRNA_1028 0.17 1.9
237,079 - 9396 mRNA_1028 0.21 2.0
237,080 + 9396 mRNA_1028 0.21 0.2
237,094 - 9396 mRNA_1028 0.22 0.2
237,400 - 9396 mRNA_1028 0.30 0.1
237,566 + 9396 mRNA_1028 0.34 0.7
238,069 + 9396 mRNA_1028 0.46 2.1
238,095 + 9396 mRNA_1028 0.47 0.2
238,101 + 9396 mRNA_1028 0.47 0.5
238,285 + 9396 mRNA_1028 0.52 1.7
238,286 - 9396 mRNA_1028 0.52 1.0
238,326 + 9396 mRNA_1028 0.53 -0.0
238,329 - 9396 mRNA_1028 0.53 0.5
238,333 - 9396 mRNA_1028 0.53 0.8
238,391 - 9396 mRNA_1028 0.55 0.0
238,502 - 9396 mRNA_1028 0.57 0.9
238,564 - 9396 mRNA_1028 0.59 0.5
238,678 - 9396 mRNA_1028 0.62 0.9
238,788 - 9396 mRNA_1028 0.65 -0.0
238,799 - 9396 mRNA_1028 0.65 -0.2
238,842 + 9396 mRNA_1028 0.66 0.5
239,183 + 9396 mRNA_1028 0.74 -0.4
239,470 - 9396 mRNA_1028 0.82 0.2
240,729 - 9397 mRNA_1029 0.38 0.8
240,740 + 9397 mRNA_1029 0.39 -0.3
241,178 + 9397 mRNA_1029 0.72 0.8