Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1005

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1004: 9372 - K02220 CLB1_2 G2/mitotic-specific cyclin 1/2, at 183792 to 186232 9372 mRNA_1005: 9373 - K08794 CAMK1 calcium/calmodulin-dependent protein kinase I, at 186567 to 188548 9373 mRNA_1006: 9374 - KOG4569 Predicted lipase, at 188789 to 191273 9374

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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185,905 - 9372 mRNA_1004 0.87 0.4
186,118 - 2.1
186,338 - -0.0
186,410 - 0.2
186,489 - 0.1
186,490 + 0.1
186,516 + -0.1
186,517 - 1.1
186,647 - 0.1
186,653 + 0.2
186,804 + 9373 mRNA_1005 0.12 -0.1
186,909 - 9373 mRNA_1005 0.17 0.7
186,933 + 9373 mRNA_1005 0.18 -1.0
186,934 - 9373 mRNA_1005 0.19 2.0
186,957 - 9373 mRNA_1005 0.20 -0.0
186,962 + 9373 mRNA_1005 0.20 0.4
186,977 - 9373 mRNA_1005 0.21 0.2
187,093 + 9373 mRNA_1005 0.27 0.6
187,503 + 9373 mRNA_1005 0.47 -0.3
187,512 - 9373 mRNA_1005 0.48 0.3
187,542 + 9373 mRNA_1005 0.49 -0.0
187,964 + 9373 mRNA_1005 0.70 0.5
187,984 - 9373 mRNA_1005 0.71 0.3
187,984 - 9373 mRNA_1005 0.71 0.1
188,119 - 9373 mRNA_1005 0.78 -0.1
188,172 + 9373 mRNA_1005 0.81 0.6
188,381 - 1.4
188,553 + 0.2
188,565 + 0.4
188,665 - -0.9
188,724 + 1.1
188,859 + 1.1
188,880 + 2.1
189,060 - 9374 mRNA_1006 0.11 0.1
189,140 - 9374 mRNA_1006 0.14 0.1
189,169 + 9374 mRNA_1006 0.15 0.5
189,201 - 9374 mRNA_1006 0.17 0.3
189,351 - 9374 mRNA_1006 0.23 0.0