Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_986

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_985: 9353 - K14399 CLP1, HERB polyribonucleotide 5'-hydroxyl-kinase, at 133599 to 135746 9353 mRNA_986: 9354 - K03781 katE, CAT, catB, srpA catalase, at 136496 to 139711 9354 mRNA_987: 9355 - K04773 sppA protease IV, at 140246 to 143358 9355

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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135,868 + -0.1
136,018 + -0.8
136,019 - 0.7
136,038 + -0.3
136,084 - 0.8
136,094 - 0.5
136,095 + 0.3
136,099 + 0.1
136,099 - 0.1
136,100 - 0.8
136,103 + 0.2
136,103 + 0.2
136,115 - -0.0
136,119 - -0.8
136,122 - 0.6
136,123 - -0.1
136,146 + -0.0
136,148 - -0.2
136,153 + -0.7
136,161 - 1.7
136,161 - 0.2
136,172 - 0.5
136,176 + 0.3
136,190 - -0.2
136,222 - 0.1
136,303 + 0.4
136,303 + 1.4
136,311 - 0.0
136,315 + 0.3
136,343 + 0.2
136,882 - 9354 mRNA_986 0.12 0.1
137,323 - 9354 mRNA_986 0.26 0.0
137,358 + 9354 mRNA_986 0.27 0.6
137,630 + 9354 mRNA_986 0.35 0.2
137,803 - 9354 mRNA_986 0.41 0.5
137,816 - 9354 mRNA_986 0.41 0.4
137,895 + 9354 mRNA_986 0.44 -0.1
138,197 + 9354 mRNA_986 0.53 -0.3
138,276 + 9354 mRNA_986 0.55 -1.1
138,445 - 9354 mRNA_986 0.61 0.6
138,529 - 9354 mRNA_986 0.63 -0.0
138,538 + 9354 mRNA_986 0.63 0.1
138,548 - 9354 mRNA_986 0.64 0.4
138,710 + 9354 mRNA_986 0.69 -0.4
138,838 + 9354 mRNA_986 0.73 0.8
138,981 - 9354 mRNA_986 0.77 0.2
139,136 + 9354 mRNA_986 0.82 0.8
139,230 + 9354 mRNA_986 0.85 -1.8
139,372 + 9354 mRNA_986 0.89 -0.8
139,377 + 9354 mRNA_986 0.90 0.3
139,418 - 0.6
139,569 + -0.4
139,737 + 1.7
140,164 + 0.3
140,186 + 0.6
140,384 - 1.0