Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_958

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_957: 9325 - K07160 K07160 UPF0271 protein, at 67059 to 67959 9325 mRNA_958: 9326 - K14541 DUR1 urea carboxylase / allophanate hydrolase, at 68505 to 72950 9326 mRNA_959: 9327 - Hypothetical Protein, at 73133 to 74885 9327

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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67,540 - 9325 mRNA_957 0.53 1.0
67,541 + 9325 mRNA_957 0.53 0.4
67,567 - 9325 mRNA_957 0.56 0.8
67,590 + 9325 mRNA_957 0.59 -0.4
67,706 + 9325 mRNA_957 0.72 -1.7
67,709 - 9325 mRNA_957 0.72 -0.1
67,719 - 9325 mRNA_957 0.73 0.5
67,751 + 9325 mRNA_957 0.77 0.4
68,023 - -1.4
68,047 + -0.3
68,132 + -0.3
68,141 - 0.4
68,156 + -0.3
68,166 - 0.6
68,167 - 0.2
68,189 - 0.4
68,340 - 0.3
68,448 - -0.7
68,470 - 1.1
68,476 + 0.6
68,493 + 0.1
68,624 - 0.3
68,680 - 1.1
68,727 - 2.1
68,784 + 0.4
68,882 + 0.4
68,917 + 0.1
68,930 + 0.9
69,200 - 9326 mRNA_958 0.16 0.1
69,221 + 9326 mRNA_958 0.16 0.6
69,250 + 9326 mRNA_958 0.17 0.4
69,272 + 9326 mRNA_958 0.17 0.8
69,389 + 9326 mRNA_958 0.20 0.7
69,490 - 9326 mRNA_958 0.22 0.3
69,625 + 9326 mRNA_958 0.25 0.7
69,637 - 9326 mRNA_958 0.25 0.4
69,661 + 9326 mRNA_958 0.26 0.3
69,665 - 9326 mRNA_958 0.26 0.3
69,758 - 9326 mRNA_958 0.28 -0.0
69,778 - 9326 mRNA_958 0.29 0.3
69,795 - 9326 mRNA_958 0.29 0.0
69,912 - 9326 mRNA_958 0.32 0.5
69,973 + 9326 mRNA_958 0.33 1.6
70,227 - 9326 mRNA_958 0.39 1.5
70,361 + 9326 mRNA_958 0.42 0.1
70,416 - 9326 mRNA_958 0.43 1.0
70,857 - 9326 mRNA_958 0.53 -0.1
70,961 - 9326 mRNA_958 0.55 0.0
70,964 - 9326 mRNA_958 0.55 0.4
71,595 + 9326 mRNA_958 0.70 0.4
71,603 + 9326 mRNA_958 0.70 0.2
71,630 - 9326 mRNA_958 0.70 0.2
71,687 + 9326 mRNA_958 0.72 0.6
71,695 + 9326 mRNA_958 0.72 1.7
71,705 + 9326 mRNA_958 0.72 0.7
71,732 - 9326 mRNA_958 0.73 -0.3
71,746 + 9326 mRNA_958 0.73 -1.0
71,753 + 9326 mRNA_958 0.73 0.3
71,784 + 9326 mRNA_958 0.74 0.8
71,990 + 9326 mRNA_958 0.78 0.3
72,096 - 9326 mRNA_958 0.81 0.4
72,108 + 9326 mRNA_958 0.81 1.1
72,183 - 9326 mRNA_958 0.83 -0.5
72,340 + 9326 mRNA_958 0.86 -0.4
72,875 - 1.5
72,910 + 0.7
72,924 + 0.4
72,926 + 0.4
72,928 - -0.2
73,084 + 1.5
73,203 - 1.1
73,678 + 9327 mRNA_959 0.31 1.2
73,722 + 9327 mRNA_959 0.34 0.3
73,780 - 9327 mRNA_959 0.37 0.9
73,945 - 9327 mRNA_959 0.46 0.9