Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_935

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_934: 9302 - K18726 FAF2, UBXD8 FAS-associated factor 2, at 12086 to 14306 9302 mRNA_935: 9303 - HMMPfam-Glycosyl Hydrolase Family 88-PF07470,SUPERFAMILY--SSF48208, at 14546 to 16225 9303 mRNA_936: 9304 - K10365 CAPZB capping protein (actin filament) muscle Z-line, beta, at 16670 to 18291 9304

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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13,678 + 9302 mRNA_934 0.72 0.7
13,776 + 9302 mRNA_934 0.76 0.4
14,083 - 9302 mRNA_934 0.90 0.9
14,221 - 1.1
14,382 - 0.9
14,501 - -0.1
14,553 + -0.5
14,802 + 9303 mRNA_935 0.15 0.4
14,804 - 9303 mRNA_935 0.15 0.2
14,914 + 9303 mRNA_935 0.22 1.2
14,946 - 9303 mRNA_935 0.24 -0.5
14,983 - 9303 mRNA_935 0.26 -0.9
15,237 - 9303 mRNA_935 0.41 0.4
15,245 - 9303 mRNA_935 0.42 0.6
15,262 + 9303 mRNA_935 0.43 0.0
15,387 + 9303 mRNA_935 0.50 -0.3
15,394 + 9303 mRNA_935 0.50 1.5
15,520 - 9303 mRNA_935 0.58 0.4
15,543 - 9303 mRNA_935 0.59 0.5
15,545 + 9303 mRNA_935 0.59 0.7
15,548 - 9303 mRNA_935 0.60 0.8
15,562 + 9303 mRNA_935 0.60 -0.3
15,566 + 9303 mRNA_935 0.61 0.2
15,587 + 9303 mRNA_935 0.62 -0.4
15,676 - 9303 mRNA_935 0.67 -0.2
15,682 + 9303 mRNA_935 0.68 0.4
15,683 + 9303 mRNA_935 0.68 -0.4
15,687 + 9303 mRNA_935 0.68 -0.5
15,689 + 9303 mRNA_935 0.68 0.7
15,813 - 9303 mRNA_935 0.75 -1.1
15,835 - 9303 mRNA_935 0.77 0.3
15,955 - 9303 mRNA_935 0.84 -0.2
16,063 - -0.8
16,110 - 0.3
16,143 + 0.3
16,233 + 0.5
16,275 - 1.6
16,309 - 2.1
16,338 - 0.6
16,448 - 0.1
16,455 + -0.4
16,457 - 0.0
16,467 + -0.0
16,473 - 1.1
16,551 + 0.4
16,603 + 1.0
16,699 + 0.5
16,699 + 1.0
16,746 + 0.1
16,801 + 0.1
17,057 + 9304 mRNA_936 0.24 -1.0
17,190 + 9304 mRNA_936 0.32 0.2