Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_930

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_930: 9298 - K00861 RFK, FMN1 riboflavin kinase, at 359 to 1600 9298 mRNA_931: 9299 - K14794 RRP12 ribosomal RNA-processing protein 12, at 1838 to 6021 9299

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1 + 1.1
1 + 0.8
1 + 0.5
1 + 0.2
1 + 0.2
2 + 0.3
2 + -1.0
5 + 0.3
18 + 0.2
30 + 0.0
37 + 0.3
37 + 0.6
41 + 0.2
42 + 0.1
44 + 0.8
49 + 0.0
49 + -0.1
50 + 0.1
54 + 0.5
58 - 0.6
60 - 1.0
60 + -0.2
60 - 0.2
61 - -0.7
61 + -0.4
63 + 1.5
63 + 1.1
63 + -0.7
63 + 0.3
63 + 0.1
63 + 0.3
64 + -0.4
66 - 0.2
66 + 0.5
70 + -0.2
70 + 1.5
70 - 0.4
71 + 0.3
73 + 0.6
75 - 0.1
77 - 0.6
78 + 0.1
78 - -0.6
78 + 0.4
78 + 0.8
78 + -1.3
78 + 1.0
78 + 0.8
78 + -0.2
78 + -0.9
79 + 1.8
81 - -0.4
81 - 0.2
82 + -0.3
85 + 0.4
104 + 0.5
126 + 0.3
126 + -1.5
128 - 1.5
135 + -0.8
142 + 0.5
150 + -0.1
154 + -2.4
157 + -0.4
171 - -0.0
171 + 0.8
172 + -0.6
172 + -0.1
175 - -0.6
176 - -0.2
177 - -0.1
177 - 0.4
191 - 0.1
192 + 1.0
192 + 0.8
192 + 0.5
193 + -0.1
193 + 0.2
193 + -0.1
198 - 0.2
218 + 0.1
225 + 0.7
235 + -0.3
242 + 0.9
263 - -0.1
293 + -0.0
303 + 1.6
333 - 0.6
339 - 1.0
348 + 0.6
349 + 0.4
377 - 0.9
381 - 0.5
469 + -0.9
487 - 9298 mRNA_930 0.10 -0.2
722 + 9298 mRNA_930 0.29 1.5
1,641 - 1.0
1,656 - 0.5
1,768 - -0.2
1,778 - -0.6
1,794 + 1.2