Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_927

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_926: 9294 - K20647 ARHGAP32 Rho GTPase-activating protein 32, at 2208213 to 2211495 9294 mRNA_927: 9295 - KOG1611 Predicted short chain-type dehydrogenase, at 2211766 to 2213032 9295 mRNA_928: 9296 - Hypothetical Protein, at 2213301 to 2214624 9296

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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2,210,848 - 9294 mRNA_926 0.80 1.0
2,211,008 + 9294 mRNA_926 0.85 -0.8
2,211,138 - 9294 mRNA_926 0.89 0.5
2,211,230 + 0.4
2,211,261 - 0.3
2,211,269 - -0.3
2,211,293 + -1.5
2,211,385 - 0.2
2,211,610 - 1.1
2,211,627 - -0.8
2,211,678 + -0.3
2,211,681 + 0.5
2,211,723 + 2.1
2,211,723 + 0.7
2,211,723 + -0.1
2,211,758 + 0.9
2,211,787 - -0.2
2,211,902 + 9295 mRNA_927 0.11 0.3
2,211,904 - 9295 mRNA_927 0.11 1.4
2,211,935 + 9295 mRNA_927 0.13 0.9
2,211,944 + 9295 mRNA_927 0.14 0.2
2,212,030 - 9295 mRNA_927 0.21 0.2
2,212,032 - 9295 mRNA_927 0.21 -0.1
2,212,035 - 9295 mRNA_927 0.21 0.2
2,212,043 + 9295 mRNA_927 0.22 -0.3
2,212,065 - 9295 mRNA_927 0.24 0.6
2,212,097 + 9295 mRNA_927 0.26 1.7
2,212,200 - 9295 mRNA_927 0.34 0.2
2,212,205 + 9295 mRNA_927 0.35 -1.0
2,212,286 - 9295 mRNA_927 0.41 2.5
2,212,309 + 9295 mRNA_927 0.43 1.0
2,212,330 + 9295 mRNA_927 0.45 1.2
2,212,333 - 9295 mRNA_927 0.45 0.5
2,212,333 - 9295 mRNA_927 0.45 -0.1
2,212,365 - 9295 mRNA_927 0.47 0.7
2,212,368 + 9295 mRNA_927 0.48 1.0
2,212,489 + 9295 mRNA_927 0.57 0.5
2,212,492 + 9295 mRNA_927 0.57 1.1
2,212,494 + 9295 mRNA_927 0.57 1.2
2,212,514 - 9295 mRNA_927 0.59 0.4
2,212,531 - 9295 mRNA_927 0.60 2.5
2,212,604 - 9295 mRNA_927 0.66 0.0
2,212,611 + 9295 mRNA_927 0.67 0.1
2,212,617 - 9295 mRNA_927 0.67 0.6
2,212,637 + 9295 mRNA_927 0.69 -0.1
2,212,640 - 9295 mRNA_927 0.69 2.0
2,212,659 - 9295 mRNA_927 0.70 0.6
2,212,669 + 9295 mRNA_927 0.71 1.0
2,212,755 - 9295 mRNA_927 0.78 0.5
2,212,834 - 9295 mRNA_927 0.84 0.8
2,212,912 - -0.6
2,212,951 - -1.0
2,212,957 + 1.5
2,213,037 - 1.5
2,213,066 - 0.9
2,213,082 - 0.3
2,213,102 - 0.0
2,213,115 + 0.2
2,213,122 + 0.7
2,213,221 - 1.2
2,213,230 + -0.7
2,213,236 - -0.1
2,213,240 + 0.2
2,213,242 - 0.1
2,213,243 + 1.0
2,213,257 + 1.2
2,213,381 + 0.1
2,213,387 + 1.2
2,213,388 - 0.3
2,213,390 + 0.1
2,213,390 - -0.0
2,213,393 - 0.8
2,213,399 - 0.3
2,213,412 - 0.2
2,213,414 + -0.9
2,213,477 - 9296 mRNA_928 0.13 0.7
2,213,555 - 9296 mRNA_928 0.19 -0.4
2,213,558 + 9296 mRNA_928 0.19 0.5
2,213,585 - 9296 mRNA_928 0.21 0.8
2,213,671 + 9296 mRNA_928 0.28 -0.2
2,213,699 - 9296 mRNA_928 0.30 0.5
2,213,703 - 9296 mRNA_928 0.30 0.4
2,213,709 - 9296 mRNA_928 0.31 1.5
2,213,731 + 9296 mRNA_928 0.32 -0.5
2,213,764 - 9296 mRNA_928 0.35 0.3
2,213,832 - 9296 mRNA_928 0.40 0.6
2,213,855 + 9296 mRNA_928 0.42 -0.1
2,213,860 + 9296 mRNA_928 0.42 0.3
2,213,863 - 9296 mRNA_928 0.42 -0.6
2,213,991 - 9296 mRNA_928 0.52 0.3
2,214,012 - 9296 mRNA_928 0.54 0.4