Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_924

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_923: 9291 - K03446 emrB MFS transporter, DHA2 family, multidrug resistance protein, at 2202019 to 2204450 9291 mRNA_924: 9292 - KOG0798 Uncharacterized conserved protein, at 2204768 to 2206248 9292 mRNA_925: 9293 - K10704 UBE2V ubiquitin-conjugating enzyme E2 variant, at 2206531 to 2207210 9293

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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2,203,778 + 9291 mRNA_923 0.72 0.5
2,203,780 + 9291 mRNA_923 0.72 0.7
2,203,782 - 9291 mRNA_923 0.72 0.8
2,203,784 + 9291 mRNA_923 0.73 0.6
2,203,792 + 9291 mRNA_923 0.73 0.1
2,203,841 - 9291 mRNA_923 0.75 0.1
2,203,928 + 9291 mRNA_923 0.78 -0.4
2,204,089 - 9291 mRNA_923 0.85 1.4
2,204,099 + 9291 mRNA_923 0.86 0.8
2,204,102 - 9291 mRNA_923 0.86 0.2
2,204,176 + 9291 mRNA_923 0.89 0.1
2,204,178 - 9291 mRNA_923 0.89 -0.1
2,204,290 + 0.3
2,204,323 - 0.5
2,204,371 - 1.0
2,204,371 - -0.7
2,204,371 + 1.6
2,204,398 + -0.1
2,204,409 - -0.3
2,204,424 - 0.2
2,204,495 - 0.2
2,204,542 - -0.1
2,204,604 + 1.9
2,204,640 - 0.3
2,204,644 + -0.1
2,204,649 - 0.1
2,204,674 - 0.3
2,204,679 - 0.1
2,204,682 - 0.5
2,204,685 + 1.5
2,204,686 - 0.8
2,204,737 + 1.4
2,204,737 + 0.1
2,204,886 - 0.8
2,204,990 + 9292 mRNA_924 0.15 0.8
2,205,017 + 9292 mRNA_924 0.17 0.4
2,205,022 - 9292 mRNA_924 0.17 -0.5
2,205,115 - 9292 mRNA_924 0.23 0.9
2,205,210 + 9292 mRNA_924 0.30 -0.9
2,205,476 - 9292 mRNA_924 0.48 -0.3
2,205,507 - 9292 mRNA_924 0.50 1.1
2,205,550 + 9292 mRNA_924 0.53 -0.4
2,205,642 - 9292 mRNA_924 0.59 1.1
2,205,769 + 9292 mRNA_924 0.68 0.5
2,205,893 + 9292 mRNA_924 0.76 0.7
2,205,923 - 9292 mRNA_924 0.78 1.5
2,206,064 - 9292 mRNA_924 0.88 -0.2
2,206,295 - 0.8
2,206,327 - -0.4
2,206,516 - 0.3
2,206,650 + 9293 mRNA_925 0.17 0.3
2,206,805 - 9293 mRNA_925 0.40 2.0
2,206,928 - 9293 mRNA_925 0.58 0.3
2,206,941 - 9293 mRNA_925 0.60 1.3
2,207,211 + -0.4
2,207,237 + -1.1