Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_920

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_919: 9287 - KOG1397 Ca2+/H+ antiporter VCX1 and related proteins, at 2192873 to 2195509 9287 mRNA_920: 9288 - BLAST cytochrome c heme-binding site [Moesziomyces anta..., at 2196157 to 2196942 9288 mRNA_921: 9289 - KOG1485 Mitochondrial Fe2+ transporter MMT1 and related transporters (cation diffusion facilitator superfamily), at 2197080 to 2198559 9289

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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2,195,269 + -0.5
2,195,281 - 0.4
2,195,448 + 0.7
2,195,550 - 1.8
2,195,571 - 0.3
2,195,578 + 0.4
2,195,594 - -0.3
2,195,594 + 0.1
2,195,599 - 0.3
2,195,603 + 0.0
2,195,606 + -0.8
2,195,607 + 0.3
2,195,622 - 0.4
2,195,629 + 0.3
2,195,637 - 0.7
2,195,643 - 0.4
2,195,673 + 0.2
2,195,717 - 0.5
2,195,719 - 1.7
2,195,724 - 0.5
2,195,724 + 0.1
2,195,742 + -0.5
2,195,757 + -0.2
2,195,762 - 0.6
2,195,763 - 0.8
2,195,782 + 0.3
2,195,858 + -0.4
2,195,899 + 2.7
2,195,944 - 0.4
2,196,042 + 0.2
2,196,049 + -1.3
2,196,055 + 0.6
2,196,058 + 0.1
2,196,069 + -0.6
2,196,073 + 0.3
2,196,178 - 0.0
2,196,215 + 0.9
2,196,336 + 9288 mRNA_920 0.23 0.3
2,196,513 - 9288 mRNA_920 0.45 -0.3
2,196,519 - 9288 mRNA_920 0.46 1.3
2,196,521 - 9288 mRNA_920 0.46 -0.1
2,196,684 - 9288 mRNA_920 0.67 1.3
2,196,824 + 9288 mRNA_920 0.85 0.7
2,196,908 - -0.6
2,196,954 + 0.8
2,197,079 - 1.9
2,197,365 + 9289 mRNA_921 0.19 0.3
2,197,694 - 9289 mRNA_921 0.41 1.0
2,197,926 - 9289 mRNA_921 0.57 0.2