Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_891

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_890: 9258 - HMMPfam-Double-stranded RNA binding motif-PF00035,HMMPfam-Ribonuclease-III-like-PF14622,ProSiteProfiles-Double stranded RNA-binding domain (dsRBD) profile.-PS50137,ProSiteProfiles-Ribonuclease III family domain profile.-PS50142,SMART-Double-stranded RNA binding motif-SM00358,SMART-Ribonuclease III family-SM00535,SUPERFAMILY--SSF54768,SUPERFAMILY--SSF69065, at 2126820 to 2127805 9258 mRNA_891: 9259 - K01405 PRD1 saccharolysin, at 2128133 to 2130693 9259 mRNA_892: 9260 - K11827 AP2S1 AP-2 complex subunit sigma-1, at 2131150 to 2131840 9260

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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2,127,383 + 9258 mRNA_890 0.57 -0.0
2,127,428 + 9258 mRNA_890 0.62 0.3
2,127,555 - 9258 mRNA_890 0.75 0.2
2,127,740 + 0.7
2,127,771 - -0.2
2,127,899 + 0.2
2,128,280 + 1.9
2,128,317 + 0.3
2,128,403 - 9259 mRNA_891 0.11 0.0
2,128,602 - 9259 mRNA_891 0.18 -0.6
2,128,849 + 9259 mRNA_891 0.28 -0.4
2,129,041 - 9259 mRNA_891 0.35 0.3
2,129,153 - 9259 mRNA_891 0.40 0.2
2,129,184 + 9259 mRNA_891 0.41 0.3
2,129,382 - 9259 mRNA_891 0.49 0.5
2,129,388 + 9259 mRNA_891 0.49 -0.1
2,129,418 + 9259 mRNA_891 0.50 0.2
2,129,588 - 9259 mRNA_891 0.57 0.4
2,129,628 - 9259 mRNA_891 0.58 -0.6
2,129,841 - 9259 mRNA_891 0.67 0.3
2,129,899 - 9259 mRNA_891 0.69 0.1
2,129,903 - 9259 mRNA_891 0.69 -0.5
2,129,911 + 9259 mRNA_891 0.69 -1.0
2,130,180 + 9259 mRNA_891 0.80 0.2
2,130,189 + 9259 mRNA_891 0.80 0.5
2,130,315 + 9259 mRNA_891 0.85 -0.0
2,130,447 + 0.1
2,130,519 + 2.4
2,130,612 - 0.3
2,130,708 + 0.4
2,130,771 + 1.9
2,130,857 - -0.1
2,130,857 - -0.4
2,131,043 + 0.4
2,131,062 + 0.3
2,131,063 + -0.4
2,131,641 - 9260 mRNA_892 0.71 0.3